Update day_intervals_cohort_v22.py
Browse files
day_intervals_cohort_v22.py
CHANGED
@@ -29,7 +29,7 @@ def get_visit_pts(mimic4_path:str, group_col:str, visit_col:str, admit_col:str,
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visit = None # df containing visit information depending on using ICU or not
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if use_ICU:
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-
visit = pd.read_csv(mimic4_path + "
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if use_admn:
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# icustays doesn't have a way to identify if patient died during visit; must
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# use core/patients to remove such stay_ids for readmission labels
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visit = None # df containing visit information depending on using ICU or not
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if use_ICU:
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+
visit = pd.read_csv(mimic4_path + "icu/icustays.csv.gz", compression='gzip', header=0, index_col=None, parse_dates=[admit_col, disch_col])
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if use_admn:
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# icustays doesn't have a way to identify if patient died during visit; must
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# use core/patients to remove such stay_ids for readmission labels
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