thbndi commited on
Commit
b4ff457
1 Parent(s): 357661d

Update Mimic4Dataset.py

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Files changed (1) hide show
  1. Mimic4Dataset.py +10 -3
Mimic4Dataset.py CHANGED
@@ -55,7 +55,11 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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  "ethnicity": datasets.Value("string"),
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  "insurance": datasets.Value("string"),
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  "age": datasets.Value("int32"),
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- "COND": datasets.Sequence(datasets.Value("string"),datasets.Value("int32")),
 
 
 
 
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  "MEDS": datasets.Sequence(datasets.Value("int32"),datasets.Value("int32")),
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  "PROC": datasets.Sequence(datasets.Value("int32"),datasets.Value("int32")),
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  "CHART": datasets.Sequence(datasets.Value("int32"),datasets.Value("int32")),
@@ -126,7 +130,7 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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  proc_dict = proc.iloc[0].to_dict()
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  chart_dict = chart.iloc[0].to_dict()
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  out_dict = out.iloc[0].to_dict()
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-
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  #get stay_id which is the name of the folder containing the files
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  stay_id = int(demographic_file.split("/")[-2])
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  #get the label
@@ -141,6 +145,9 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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  "PROC" : proc_dict,
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  "CHART" : chart_dict,
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  "OUT" : out_dict,
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- "COND" : stat_dict,
 
 
 
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  "label" : label
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  }
 
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  "ethnicity": datasets.Value("string"),
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  "insurance": datasets.Value("string"),
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  "age": datasets.Value("int32"),
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+ "COND": datasets.Sequence(
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+ {
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+ "cond" : datasets.Value("string"),
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+ "value" : datasets.Value("int32")
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+ }),
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  "MEDS": datasets.Sequence(datasets.Value("int32"),datasets.Value("int32")),
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  "PROC": datasets.Sequence(datasets.Value("int32"),datasets.Value("int32")),
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  "CHART": datasets.Sequence(datasets.Value("int32"),datasets.Value("int32")),
 
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  proc_dict = proc.iloc[0].to_dict()
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  chart_dict = chart.iloc[0].to_dict()
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  out_dict = out.iloc[0].to_dict()
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+ stat2 = {'cond': list(stat_dict.keys()), 'value': list(stat_dict.values())}
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  #get stay_id which is the name of the folder containing the files
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  stay_id = int(demographic_file.split("/")[-2])
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  #get the label
 
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  "PROC" : proc_dict,
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  "CHART" : chart_dict,
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  "OUT" : out_dict,
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+ "COND" : {
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+ "cond" : stat2['cond'],
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+ "value" : stat2['value']
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+ },
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  "label" : label
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  }