--- configs: - config_name: Bacillus_subtilis_subsp._subtilis_str._168_24 data_files: - path: Bacillus_subtilis_subsp._subtilis_str._168_24/data-00000-of-00001.arrow split: train - config_name: Bacillus_subtilis_subsp._subtilis_str._168_256 data_files: - path: Bacillus_subtilis_subsp._subtilis_str._168_256/data-00000-of-00001.arrow split: train - config_name: Bacillus_subtilis_subsp._subtilis_str._168_512 data_files: - path: Bacillus_subtilis_subsp._subtilis_str._168_512/data-00000-of-00001.arrow split: train - config_name: Bacillus_subtilis_subsp._subtilis_str._168_1024 data_files: - path: Bacillus_subtilis_subsp._subtilis_str._168_1024/data-00000-of-00001.arrow split: train - config_name: Bacillus_subtilis_subsp._subtilis_str._168_2048 data_files: - path: Bacillus_subtilis_subsp._subtilis_str._168_2048/data-00000-of-00001.arrow split: train - config_name: Bacillus_subtilis_subsp._subtilis_str._168_4096 data_files: - path: Bacillus_subtilis_subsp._subtilis_str._168_4096/data-00000-of-00001.arrow split: train - config_name: Escherichia_coli_str._K-12_substr._MG1655_24 data_files: - path: Escherichia_coli_str._K-12_substr._MG1655_24/data-00000-of-00001.arrow split: train - config_name: Escherichia_coli_str._K-12_substr._MG1655_256 data_files: - path: Escherichia_coli_str._K-12_substr._MG1655_256/data-00000-of-00001.arrow split: train - config_name: Escherichia_coli_str._K-12_substr._MG1655_512 data_files: - path: Escherichia_coli_str._K-12_substr._MG1655_512/data-00000-of-00001.arrow split: train - config_name: Escherichia_coli_str._K-12_substr._MG1655_1024 data_files: - path: Escherichia_coli_str._K-12_substr._MG1655_1024/data-00000-of-00001.arrow split: train - config_name: Escherichia_coli_str._K-12_substr._MG1655_2048 data_files: - path: Escherichia_coli_str._K-12_substr._MG1655_2048/data-00000-of-00001.arrow split: train - config_name: Escherichia_coli_str._K-12_substr._MG1655_4096 data_files: - path: Escherichia_coli_str._K-12_substr._MG1655_4096/data-00000-of-00001.arrow split: train - config_name: Helicobacter_pylori_strain_26695_24 data_files: - path: Helicobacter_pylori_strain_26695_24/data-00000-of-00001.arrow split: train - config_name: Helicobacter_pylori_strain_26695_256 data_files: - path: Helicobacter_pylori_strain_26695_256/data-00000-of-00001.arrow split: train - config_name: Helicobacter_pylori_strain_26695_512 data_files: - path: Helicobacter_pylori_strain_26695_512/data-00000-of-00001.arrow split: train - config_name: Helicobacter_pylori_strain_26695_1024 data_files: - path: Helicobacter_pylori_strain_26695_1024/data-00000-of-00001.arrow split: train - config_name: Helicobacter_pylori_strain_26695_2048 data_files: - path: Helicobacter_pylori_strain_26695_2048/data-00000-of-00001.arrow split: train - config_name: Helicobacter_pylori_strain_26695_4096 data_files: - path: Helicobacter_pylori_strain_26695_4096/data-00000-of-00001.arrow split: train - config_name: Listeria_monocytogenes_str._EGD-e_24 data_files: - path: Listeria_monocytogenes_str._EGD-e_24/data-00000-of-00001.arrow split: train - config_name: Listeria_monocytogenes_str._EGD-e_256 data_files: - path: Listeria_monocytogenes_str._EGD-e_256/data-00000-of-00001.arrow split: train - config_name: Listeria_monocytogenes_str._EGD-e_512 data_files: - path: Listeria_monocytogenes_str._EGD-e_512/data-00000-of-00001.arrow split: train - config_name: Listeria_monocytogenes_str._EGD-e_1024 data_files: - path: Listeria_monocytogenes_str._EGD-e_1024/data-00000-of-00001.arrow split: train - config_name: Listeria_monocytogenes_str._EGD-e_2048 data_files: - path: Listeria_monocytogenes_str._EGD-e_2048/data-00000-of-00001.arrow split: train - config_name: Listeria_monocytogenes_str._EGD-e_4096 data_files: - path: Listeria_monocytogenes_str._EGD-e_4096/data-00000-of-00001.arrow split: train - config_name: Pseudomonas_aeruginosa_PAO1_24 data_files: - path: Pseudomonas_aeruginosa_PAO1_24/data-00000-of-00001.arrow split: train - config_name: Pseudomonas_aeruginosa_PAO1_256 data_files: - path: Pseudomonas_aeruginosa_PAO1_256/data-00000-of-00001.arrow split: train - config_name: Pseudomonas_aeruginosa_PAO1_512 data_files: - path: Pseudomonas_aeruginosa_PAO1_512/data-00000-of-00001.arrow split: train - config_name: Pseudomonas_aeruginosa_PAO1_1024 data_files: - path: Pseudomonas_aeruginosa_PAO1_1024/data-00000-of-00001.arrow split: train - config_name: Pseudomonas_aeruginosa_PAO1_2048 data_files: - path: Pseudomonas_aeruginosa_PAO1_2048/data-00000-of-00001.arrow split: train - config_name: Pseudomonas_aeruginosa_PAO1_4096 data_files: - path: Pseudomonas_aeruginosa_PAO1_4096/data-00000-of-00001.arrow split: train - config_name: Streptomyces_pristinaespiralis_24 data_files: - path: Streptomyces_pristinaespiralis_24/data-00000-of-00001.arrow split: train - config_name: Streptomyces_pristinaespiralis_256 data_files: - path: Streptomyces_pristinaespiralis_256/data-00000-of-00001.arrow split: train - config_name: Streptomyces_pristinaespiralis_512 data_files: - path: Streptomyces_pristinaespiralis_512/data-00000-of-00001.arrow split: train - config_name: Streptomyces_pristinaespiralis_1024 data_files: - path: Streptomyces_pristinaespiralis_1024/data-00000-of-00001.arrow split: train - config_name: Streptomyces_pristinaespiralis_2048 data_files: - path: Streptomyces_pristinaespiralis_2048/data-00000-of-00001.arrow split: train - config_name: Streptomyces_pristinaespiralis_4096 data_files: - path: Streptomyces_pristinaespiralis_4096/data-00000-of-00001.arrow split: train - config_name: Synechocystis_sp._strain_PCC_6803_24 data_files: - path: Synechocystis_sp._strain_PCC_6803_24/data-00000-of-00001.arrow split: train - config_name: Synechocystis_sp._strain_PCC_6803_256 data_files: - path: Synechocystis_sp._strain_PCC_6803_256/data-00000-of-00001.arrow split: train - config_name: Synechocystis_sp._strain_PCC_6803_512 data_files: - path: Synechocystis_sp._strain_PCC_6803_512/data-00000-of-00001.arrow split: train - config_name: Synechocystis_sp._strain_PCC_6803_1024 data_files: - path: Synechocystis_sp._strain_PCC_6803_1024/data-00000-of-00001.arrow split: train - config_name: Synechocystis_sp._strain_PCC_6803_2048 data_files: - path: Synechocystis_sp._strain_PCC_6803_2048/data-00000-of-00001.arrow split: train - config_name: Synechocystis_sp._strain_PCC_6803_4096 data_files: - path: Synechocystis_sp._strain_PCC_6803_4096/data-00000-of-00001.arrow split: train - config_name: Thermotoga_maritima_strain_MSB8_24 data_files: - path: Thermotoga_maritima_strain_MSB8_24/data-00000-of-00001.arrow split: train - config_name: Thermotoga_maritima_strain_MSB8_256 data_files: - path: Thermotoga_maritima_strain_MSB8_256/data-00000-of-00001.arrow split: train - config_name: Thermotoga_maritima_strain_MSB8_512 data_files: - path: Thermotoga_maritima_strain_MSB8_512/data-00000-of-00001.arrow split: train - config_name: Thermotoga_maritima_strain_MSB8_1024 data_files: - path: Thermotoga_maritima_strain_MSB8_1024/data-00000-of-00001.arrow split: train - config_name: Thermotoga_maritima_strain_MSB8_2048 data_files: - path: Thermotoga_maritima_strain_MSB8_2048/data-00000-of-00001.arrow split: train - config_name: Thermotoga_maritima_strain_MSB8_4096 data_files: - path: Thermotoga_maritima_strain_MSB8_4096/data-00000-of-00001.arrow split: train --- ## Dataset Organization The Prodoric Regulatory dataset is organized by species and context length. Each species has multiple subsets corresponding to different context lengths. ## Instructions to Download You can load a dataset using HF's API, with an example below. ```python from datasets import load_dataset prodoric_data = load_dataset("wanglab/prodoric_regulatory", 'Bacillus_subtilis_subsp._subtilis_str._168_1024') # Access the train data for a specific context length train_data = prodoric_data['train']