wyxu commited on
Commit
3ef03bc
·
1 Parent(s): e079f60

Update Genome_database.py

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Files changed (1) hide show
  1. Genome_database.py +21 -21
Genome_database.py CHANGED
@@ -16,11 +16,11 @@ class GenomeDatasetConfig(datasets.BuilderConfig):
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  **kwargs: keyword arguments forwarded to super.
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  """
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  super().__init__(**kwargs)
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- self.num_urls = num_urls if num_urls is not None else 937 # default value
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  class GenomeDataset(datasets.GeneratorBasedBuilder):
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- BUILDER_CONFIG_CLASS = GenomeDatasetConfig
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  VERSION = datasets.Version("1.1.0")
 
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  def _info(self):
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  return datasets.DatasetInfo(
@@ -40,25 +40,24 @@ class GenomeDataset(datasets.GeneratorBasedBuilder):
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  )
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  def _split_generators(self, dl_manager: datasets.DownloadManager) -> List[datasets.SplitGenerator]:
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- urls_filepath = dl_manager.download_and_extract('urlfile.txt')
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- with open(urls_filepath) as urls_file:
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- downloaded_files = [line.rstrip() for line in urls_file]
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-
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- downloaded_files = downloaded_files[:self.config.num_urls]
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-
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- train_files = downloaded_files[:int(len(downloaded_files) * 0.8)] # first 80% for training
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- test_files = downloaded_files[int(len(downloaded_files) * 0.8):] # last 20% for testing
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- return [
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- datasets.SplitGenerator(
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- name=datasets.Split.TRAIN,
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- gen_kwargs={"filepaths": train_files}
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- ),
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- datasets.SplitGenerator(
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- name=datasets.Split.TEST,
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- gen_kwargs={"filepaths": test_files}
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- )
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- ]
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  def _generate_examples(self, filepaths: List[str]) -> Tuple[str, Dict[str, Any]]:
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  split_regex = re.compile('-')
@@ -113,5 +112,6 @@ class GenomeDataset(datasets.GeneratorBasedBuilder):
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  'start_postion': start_position,
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  'end_position': end_position
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  }
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- id_+= 1
 
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  **kwargs: keyword arguments forwarded to super.
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  """
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  super().__init__(**kwargs)
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+ self.num_urls = num_urls
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  class GenomeDataset(datasets.GeneratorBasedBuilder):
 
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  VERSION = datasets.Version("1.1.0")
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+ BUILDER_CONFIG_CLASS = GenomeDatasetConfig
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  def _info(self):
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  return datasets.DatasetInfo(
 
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  )
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  def _split_generators(self, dl_manager: datasets.DownloadManager) -> List[datasets.SplitGenerator]:
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+ urls_filepath = dl_manager.download_and_extract('urlfile.txt')
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+ with open(urls_filepath) as urls_file:
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+ downloaded_files = [line.rstrip() for line in urls_file]
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+ if self.config.num_urls is not None:
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+ downloaded_files = downloaded_files[:self.config.num_urls]
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+ train_files = downloaded_files[:int(len(downloaded_files) * 0.8)] # first 80% for training
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+ test_files = downloaded_files[int(len(downloaded_files) * 0.8):] # last 20% for testing
 
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+ return [
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+ datasets.SplitGenerator(
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+ name=datasets.Split.TRAIN,
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+ gen_kwargs={"filepaths": train_files}
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+ ),
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+ datasets.SplitGenerator(
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+ name=datasets.Split.TEST,
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+ gen_kwargs={"filepaths": test_files}
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+ )
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+ ]
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  def _generate_examples(self, filepaths: List[str]) -> Tuple[str, Dict[str, Any]]:
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  split_regex = re.compile('-')
 
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  'start_postion': start_position,
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  'end_position': end_position
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  }
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+ id_ += 1
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+
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