wyxu commited on
Commit
46304c5
·
1 Parent(s): 10fb4a6

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +18 -17
README.md CHANGED
@@ -37,25 +37,26 @@ This dataset generally include five type of regions including regulator, repeat
37
  ## Dataset Structure
38
 
39
  ### Data Instances
40
- DNA id: AP013063.1
41
- Organism: Serratia marcescens SM39
42
- gene id: SM39_0001
43
- region type:coding
44
- coding type: BAO32072.1
45
- sequence: ATGCGCAACATCAGCCTGAAAACCACAATTATTACCACCACCGATACCACAGGTAACGGGGCGGGCTGA
46
- gc_content:0.52173913
47
- translation code: MRNISLKTTIITTTDTTGNGAG
48
-
 
49
 
50
  ### Data Fields
51
- DNA id: id number for the whole DNA sequence, sequences with same DNA id are from same DNA
52
- Organism: Organism of the DNA
53
- gene id: locus tag of the gene, sequences with same gene id are from same gene
54
- region type: determine whether the region is coding or non-coding; if the region is the type of regulator, it would be classified according to the class of regulators, such as terminator, ribosome binding ste, etc.
55
- coding type: if the sequence is coding sequence, it would be classified according to their production type. sequence that produce protein would be marked with protein id. Sequences that produce either rRNA or tRNA would be marked as rRNA or tRNA.
56
- sequence: the actual sequence
57
- gc_content: the gc_content of the sequence
58
- translation code: if the sequence produce protein, then the translation code would be provided as a reference
59
 
60
  ### Data Splits
61
 
 
37
  ## Dataset Structure
38
 
39
  ### Data Instances
40
+ ```python
41
+ {'DNA id': AP013063.1
42
+ 'Organism': Serratia marcescens SM39
43
+ 'gene id': SM39_0001
44
+ 'region type':coding
45
+ 'coding type': BAO32072.1
46
+ 'sequence': ATGCGCAACATCAGCCTGAAAACCACAATTATTACCACCACCGATACCACAGGTAACGGGGCGGGCTGA
47
+ 'gc_content':0.52173913
48
+ 'translation code': MRNISLKTTIITTTDTTGNGAG}
49
+ ```
50
 
51
  ### Data Fields
52
+ '__DNA id__': id number for the whole DNA sequence, sequences with same DNA id are from same DNA
53
+ '__Organism__': Organism of the DNA
54
+ '__gene id__': locus tag of the gene, sequences with same gene id are from same gene
55
+ '__region type__': determine whether the region is coding or non-coding; if the region is the type of regulator, it would be classified according to the class of regulators, such as terminator, ribosome binding ste, etc.
56
+ '__coding type__': if the sequence is coding sequence, it would be classified according to their production type. sequence that produce protein would be marked with protein id. Sequences that produce either rRNA or tRNA would be marked as rRNA or tRNA.
57
+ '__sequence__': the actual sequence
58
+ '__gc_content__': the gc_content of the sequence
59
+ '__translation code__': if the sequence produce protein, then the translation code would be provided as a reference
60
 
61
  ### Data Splits
62