Update Genome_database.py
Browse files- Genome_database.py +3 -2
Genome_database.py
CHANGED
@@ -46,6 +46,7 @@ class GenomeDataset(datasets.GeneratorBasedBuilder):
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def _generate_examples(self, filepaths: List[str]) -> Tuple[str, Dict[str, Any]]:
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split_regex = re.compile('-')
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for filepath in filepaths:
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if filepath.endswith(".seq.gz"):
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with gzip.open(filepath, 'rt') as handle:
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@@ -83,7 +84,7 @@ class GenomeDataset(datasets.GeneratorBasedBuilder):
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region_type = feature.type
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specific_class = 'NA'
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translation = 'NA'
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yield
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'DNA_id': record.id,
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'organism': organism,
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'year': year,
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@@ -96,4 +97,4 @@ class GenomeDataset(datasets.GeneratorBasedBuilder):
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'start_postion': start_position,
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'end_position': end_position
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}
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-
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def _generate_examples(self, filepaths: List[str]) -> Tuple[str, Dict[str, Any]]:
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split_regex = re.compile('-')
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+
id_ = 0
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for filepath in filepaths:
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if filepath.endswith(".seq.gz"):
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with gzip.open(filepath, 'rt') as handle:
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region_type = feature.type
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specific_class = 'NA'
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translation = 'NA'
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yield str(id_), {
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'DNA_id': record.id,
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'organism': organism,
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'year': year,
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'start_postion': start_position,
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'end_position': end_position
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}
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id_+ = 1
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