wyxu commited on
Commit
aff946c
·
1 Parent(s): d9f77e6

Update Genome_database.py

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Files changed (1) hide show
  1. Genome_database.py +10 -0
Genome_database.py CHANGED
@@ -6,7 +6,13 @@ import os
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  import gzip
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  import re
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  class GenomeDataset(datasets.GeneratorBasedBuilder):
 
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  VERSION = datasets.Version("1.1.0")
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  def _info(self):
@@ -30,6 +36,9 @@ class GenomeDataset(datasets.GeneratorBasedBuilder):
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  urls_filepath = dl_manager.download_and_extract('urlfile.txt')
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  with open(urls_filepath) as urls_file:
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  downloaded_files = [line.rstrip() for line in urls_file]
 
 
 
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  train_files = downloaded_files[:int(len(downloaded_files) * 0.8)] # first 80% for training
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  test_files = downloaded_files[int(len(downloaded_files) * 0.8):] # last 20% for testing
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@@ -98,3 +107,4 @@ class GenomeDataset(datasets.GeneratorBasedBuilder):
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  'end_position': end_position
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  }
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  id_+= 1
 
 
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  import gzip
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  import re
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+ class GenomeDatasetConfig(datasets.BuilderConfig):
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+ def __init__(self, num_urls=None, **kwargs):
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+ super(GenomeDatasetConfig, self).__init__(**kwargs)
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+ self.num_urls = num_urls if num_urls is not None else 937 # default value
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+
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  class GenomeDataset(datasets.GeneratorBasedBuilder):
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+ BUILDER_CONFIG_CLASS = GenomeDatasetConfig
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  VERSION = datasets.Version("1.1.0")
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  def _info(self):
 
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  urls_filepath = dl_manager.download_and_extract('urlfile.txt')
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  with open(urls_filepath) as urls_file:
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  downloaded_files = [line.rstrip() for line in urls_file]
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+
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+ downloaded_files = downloaded_files[:self.config.num_urls]
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+
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  train_files = downloaded_files[:int(len(downloaded_files) * 0.8)] # first 80% for training
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  test_files = downloaded_files[int(len(downloaded_files) * 0.8):] # last 20% for testing
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  'end_position': end_position
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  }
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  id_+= 1
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+