---
tags:
- bertopic
library_name: bertopic
pipeline_tag: text-classification
---

# short-pubmed-bertopic

This is a [BERTopic](https://github.com/MaartenGr/BERTopic) model. 
BERTopic is a flexible and modular topic modeling framework that allows for the generation of easily interpretable topics from large datasets. 

## Usage 

To use this model, please install BERTopic:

```
pip install -U bertopic
```

You can use the model as follows:

```python
from bertopic import BERTopic
topic_model = BERTopic.load("etanios/short-pubmed-bertopic")

topic_model.get_topic_info()
```

## Topic overview

* Number of topics: 32
* Number of training documents: 9999

<details>
  <summary>Click here for an overview of all topics.</summary>
  
  | Topic ID | Topic Keywords | Topic Frequency | Label | 
|----------|----------------|-----------------|-------| 
| -1 | patients - activity - cells - acid - 10 | 53 | Medical research studies | 
| 0 | health - children - care - medical - patient | 3897 | Healthcare and Mental Health | 
| 1 | renal - pressure - renin - blood - sodium | 702 | Renal physiology and hypertension | 
| 2 | progesterone - pregnancy - lh - testosterone - fetal | 516 | Reproductive physiology and endocrinology | 
| 3 | ventricular - coronary - left - patients - myocardial | 404 | Cardiac physiology and anatomy | 
| 4 | method - gas - liquid - chromatography - urine | 381 | Analytical techniques for chemical analysis | 
| 5 | morphine - mg kg - kg - brain - mg | 296 | Effects of drugs on rat behavior | 
| 6 | cells - tumor - mice - cell - lymphocytes | 281 | Tumor immunology and lymphocyte activation | 
| 7 | hip - patients - joint - rheumatoid - knee | 278 | Hip and Knee Fractures in Rheumatoid Arthritis Patients | 
| 8 | cells - electron - cell - axons - synaptic | 265 | Neuroanatomy and Synaptic Structures | 
| 9 | retinal - eyes - vitreous - eye - cases | 237 | Ocular Surgery | 
| 10 | patients - ulcer - cases - disease - crohn | 203 | Gastrointestinal surgery and complications | 
| 11 | strains - resistant - antibiotic - gentamicin - antibiotics | 201 | Antibiotic resistance in bacterial strains | 
| 12 | enzyme - molecular - acid - activity - phosphate | 201 | Enzymology and Molecular Biology | 
| 13 | iron - hemoglobin - hb - erythrocytes - deficiency | 178 | Iron Deficiency Anemia Research | 
| 14 | infection - virus - infected - vaccinated - cattle | 175 | Virus infection and vaccination studies | 
| 15 | platelet - platelets - aggregation - fibrinogen - coagulation | 167 | Platelet function and coagulation | 
| 16 | cancer - carcinoma - patients - tumor - cases | 158 | Cancer treatment and survival rates | 
| 17 | lung - volume - oxygen - flow - ventilation | 152 | Pulmonary Function and Exercise | 
| 18 | calcium - thyroid - t3 - parathyroid - t4 | 151 | Thyroid and Parathyroid Hormones | 
| 19 | fatty - cholesterol - acid - liver - acids | 144 | Lipid metabolism in rats | 
| 20 | diet - weight - egg - diets - fed | 117 | Poultry Nutrition and Physiology | 
| 21 | stimulation - nerve - neurons - units - motor | 111 | Motor Neuron Discharge and Potentials | 
| 22 | glucose - insulin - glucagon - levels - blood glucose | 102 | Insulin and glucose metabolism | 
| 23 | hearing - ear - cochlear - auditory - noise | 99 | Hearing and Auditory Function | 
| 24 | rna - dna - chromatin - proteins - polymerase | 95 |  | 
| 25 | carotid - artery - intracranial - aneurysms - subdural | 94 | Carotid Artery Aneurysms and Intracranial Hemorrhage | 
| 26 | bone - mineral - fluoride - enamel - mineralization | 81 | Bone and Mineral Metabolism | 
| 27 | temperature - degrees - heat - temperatures - cold | 75 | Effects of Temperature on Human Physiology | 
| 28 | bile - acid - biliary - cholesterol - bile acid | 63 | Biliary Lipid Metabolism | 
| 29 | visual - light - receptive - sensitivity - dark | 61 | Visual processing and sensitivity | 
| 30 | lung - pulmonary - chest - pleural - patients | 61 | Respiratory system diseases and disorders |
  
</details>

## Training hyperparameters

* calculate_probabilities: False
* language: None
* low_memory: False
* min_topic_size: 10
* n_gram_range: (1, 1)
* nr_topics: None
* seed_topic_list: None
* top_n_words: 10
* verbose: True

## Framework versions

* Numpy: 1.23.5
* HDBSCAN: 0.8.33
* UMAP: 0.5.4
* Pandas: 1.5.3
* Scikit-Learn: 1.2.2
* Sentence-transformers: 2.2.2
* Transformers: 4.33.2
* Numba: 0.56.4
* Plotly: 5.15.0
* Python: 3.10.12