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Update README.md
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README.md
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@@ -54,6 +54,20 @@ pip install git+https://github.com/BiomedSciAI/biomed-multi-alignment.git
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A simple example for a task already supported by `ibm/biomed.omics.bl.sm.ma-ted-458m.tcr_epitope_bind`:
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See our detailed example at: on `https://github.com/BiomedSciAI/biomed-multi-alignment`
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A simple example for a task already supported by `ibm/biomed.omics.bl.sm.ma-ted-458m.tcr_epitope_bind`:
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from mammal.examples.tcr_epitope_binding.main_infer import load_model, task_infer
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tcr_beta_seq = "NAGVTQTPKFQVLKTGQSMTLQCAQDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCASSYSWDRVLEQYFGPGTRLTVT"
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epitope_seq = "LLQTGIHVRVSQPSL"
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model_inst, tokenizer_op = load_model(device="cpu")
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result = task_infer(
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model=model_inst,
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tokenizer_op=tokenizer_op,
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tcr_beta_seq=tcr_beta_seq,
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epitope_seq=epitope_seq,
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)
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print(f"The prediction for {epitope_seq} and {tcr_beta_seq} is {result}")
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See our detailed example at: on `https://github.com/BiomedSciAI/biomed-multi-alignment`
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