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ibm
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biomed.omics.bl.sm.ma-ted-458m.tcr_epitope_bind

Safetensors
PyTorch
biomed-multi-alignment
drug-discovery
ibm
mammal
TCR
epitope
affinity
Model card Files Community
3
SagiPolaczek commited on
Commit
f8371c4
•
1 Parent(s): 9b8f2d0

Push model using huggingface_hub.

Browse files
Files changed (4) hide show
  1. tokenizer/bpe_tokenizer_trained_on_chembl_zinc_with_aug_4272372_samples_balanced_1_1.json +2 -2
  2. tokenizer/cell_attributes_tokenizer.json +2 -2
  3. tokenizer/gene_tokenizer.json +2 -2
  4. tokenizer/t5_tokenizer_AA_special.json +2 -2
tokenizer/bpe_tokenizer_trained_on_chembl_zinc_with_aug_4272372_samples_balanced_1_1.json CHANGED
@@ -86,7 +86,7 @@
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  },
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  {
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  "id": 9,
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- "content": "<INTERNAL_1>",
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  "single_word": false,
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  "lstrip": false,
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  "rstrip": false,
@@ -2853,7 +2853,7 @@
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  "<MOLECULAR_ENTITY>": 6,
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  "<GLOBAL_INTERACTION_ATTRIBUTES>": 7,
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  "<INTERNAL_0>": 8,
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- "<INTERNAL_1>": 9,
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  "<INTERNAL_2>": 10,
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  "<INTERNAL_3>": 11,
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  "<MOLECULAR_ENTITY_TCR_ALPHA_CHAIN>": 12,
 
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  },
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  {
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  "id": 9,
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+ "content": "<MOLECULAR_ENTITY_EPITOPE>",
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  "single_word": false,
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  "lstrip": false,
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  "rstrip": false,
 
2853
  "<MOLECULAR_ENTITY>": 6,
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  "<GLOBAL_INTERACTION_ATTRIBUTES>": 7,
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  "<INTERNAL_0>": 8,
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+ "<MOLECULAR_ENTITY_EPITOPE>": 9,
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  "<INTERNAL_2>": 10,
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  "<INTERNAL_3>": 11,
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  "<MOLECULAR_ENTITY_TCR_ALPHA_CHAIN>": 12,
tokenizer/cell_attributes_tokenizer.json CHANGED
@@ -86,7 +86,7 @@
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  },
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  {
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  "id": 9,
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- "content": "<INTERNAL_1>",
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  "single_word": false,
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  "lstrip": false,
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  "rstrip": false,
@@ -2858,7 +2858,7 @@
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  "<MOLECULAR_ENTITY>": 6,
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  "<GLOBAL_INTERACTION_ATTRIBUTES>": 7,
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  "<INTERNAL_0>": 8,
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- "<INTERNAL_1>": 9,
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  "<INTERNAL_2>": 10,
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  "<INTERNAL_3>": 11,
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  "<MOLECULAR_ENTITY_TCR_ALPHA_CHAIN>": 12,
 
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  },
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  {
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  "id": 9,
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+ "content": "<MOLECULAR_ENTITY_EPITOPE>",
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  "single_word": false,
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  "lstrip": false,
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  "rstrip": false,
 
2858
  "<MOLECULAR_ENTITY>": 6,
2859
  "<GLOBAL_INTERACTION_ATTRIBUTES>": 7,
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  "<INTERNAL_0>": 8,
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+ "<MOLECULAR_ENTITY_EPITOPE>": 9,
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  "<INTERNAL_2>": 10,
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  "<INTERNAL_3>": 11,
2864
  "<MOLECULAR_ENTITY_TCR_ALPHA_CHAIN>": 12,
tokenizer/gene_tokenizer.json CHANGED
@@ -86,7 +86,7 @@
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  },
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  {
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  "id": 9,
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- "content": "<INTERNAL_1>",
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  "single_word": false,
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  "lstrip": false,
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  "rstrip": false,
@@ -2858,7 +2858,7 @@
2858
  "<MOLECULAR_ENTITY>": 6,
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  "<GLOBAL_INTERACTION_ATTRIBUTES>": 7,
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  "<INTERNAL_0>": 8,
2861
- "<INTERNAL_1>": 9,
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  "<INTERNAL_2>": 10,
2863
  "<INTERNAL_3>": 11,
2864
  "<MOLECULAR_ENTITY_TCR_ALPHA_CHAIN>": 12,
 
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  },
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  {
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  "id": 9,
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+ "content": "<MOLECULAR_ENTITY_EPITOPE>",
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  "single_word": false,
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  "lstrip": false,
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  "rstrip": false,
 
2858
  "<MOLECULAR_ENTITY>": 6,
2859
  "<GLOBAL_INTERACTION_ATTRIBUTES>": 7,
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  "<INTERNAL_0>": 8,
2861
+ "<MOLECULAR_ENTITY_EPITOPE>": 9,
2862
  "<INTERNAL_2>": 10,
2863
  "<INTERNAL_3>": 11,
2864
  "<MOLECULAR_ENTITY_TCR_ALPHA_CHAIN>": 12,
tokenizer/t5_tokenizer_AA_special.json CHANGED
@@ -86,7 +86,7 @@
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  },
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  {
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  "id": 9,
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- "content": "<INTERNAL_1>",
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  "single_word": false,
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  "lstrip": false,
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  "rstrip": false,
@@ -2858,7 +2858,7 @@
2858
  "<MOLECULAR_ENTITY>": 6,
2859
  "<GLOBAL_INTERACTION_ATTRIBUTES>": 7,
2860
  "<INTERNAL_0>": 8,
2861
- "<INTERNAL_1>": 9,
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  "<INTERNAL_2>": 10,
2863
  "<INTERNAL_3>": 11,
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  "<MOLECULAR_ENTITY_TCR_ALPHA_CHAIN>": 12,
 
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  },
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  {
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  "id": 9,
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+ "content": "<MOLECULAR_ENTITY_EPITOPE>",
90
  "single_word": false,
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  "lstrip": false,
92
  "rstrip": false,
 
2858
  "<MOLECULAR_ENTITY>": 6,
2859
  "<GLOBAL_INTERACTION_ATTRIBUTES>": 7,
2860
  "<INTERNAL_0>": 8,
2861
+ "<MOLECULAR_ENTITY_EPITOPE>": 9,
2862
  "<INTERNAL_2>": 10,
2863
  "<INTERNAL_3>": 11,
2864
  "<MOLECULAR_ENTITY_TCR_ALPHA_CHAIN>": 12,