config.cfg

[paths]
train = "100_percent.spacy"
dev = "rw_test.spacy"
vectors = null
init_tok2vec = null

[system]
gpu_allocator = "pytorch"
seed = 42

[nlp]
lang = "en"
pipeline = ["transformer","ner","textcat"]
batch_size = 256
disabled = []
before_creation = null
after_creation = null
after_pipeline_creation = null
tokenizer = {"@tokenizers":"spacy.Tokenizer.v1"}

[components]

[components.ner]
factory = "ner"
incorrect_spans_key = null
moves = null
scorer = {"@scorers":"spacy.ner_scorer.v1"}
update_with_oracle_cut_size = 100

[components.ner.model]
@architectures = "spacy.TransitionBasedParser.v2"
state_type = "ner"
extra_state_tokens = false
hidden_width = 64
maxout_pieces = 2
use_upper = false
nO = null

[components.ner.model.tok2vec]
@architectures = "spacy-transformers.TransformerListener.v1"
grad_factor = 1.0
pooling = {"@layers":"reduce_mean.v1"}
upstream = "*"

[components.textcat]
factory = "textcat"
scorer = {"@scorers":"spacy.textcat_scorer.v1"}
threshold = 0.5

[components.textcat.model]
@architectures = "spacy.TextCatEnsemble.v2"
nO = null

[components.textcat.model.linear_model]
@architectures = "spacy.TextCatBOW.v2"
exclusive_classes = true
ngram_size = 1
no_output_layer = false
nO = null

[components.textcat.model.tok2vec]
@architectures = "spacy-transformers.TransformerListener.v1"
grad_factor = 1.0
pooling = {"@layers":"reduce_mean.v1"}
upstream = "*"

[components.transformer]
factory = "transformer"
max_batch_items = 4096
set_extra_annotations = {"@annotation_setters":"spacy-transformers.null_annotation_setter.v1"}

[components.transformer.model]
@architectures = "spacy-transformers.TransformerModel.v3"
name = "roberta-base"
mixed_precision = false

[components.transformer.model.get_spans]
@span_getters = "spacy-transformers.strided_spans.v1"
window = 128
stride = 96

[components.transformer.model.grad_scaler_config]

[components.transformer.model.tokenizer_config]
use_fast = true

[components.transformer.model.transformer_config]

[corpora]

[corpora.dev]
@readers = "spacy.Corpus.v1"
path = ${paths.dev}
max_length = 0
gold_preproc = false
limit = 0
augmenter = null

[corpora.train]
@readers = "spacy.Corpus.v1"
path = ${paths.train}
max_length = 0
gold_preproc = false
limit = 0
augmenter = null

[training]
accumulate_gradient = 3
dev_corpus = "corpora.dev"
train_corpus = "corpora.train"
seed = ${system.seed}
gpu_allocator = ${system.gpu_allocator}
dropout = 0.05
patience = 1600
max_epochs = 0
max_steps = 20000
eval_frequency = 200
frozen_components = []
annotating_components = []
before_to_disk = null

[training.batcher]
@batchers = "spacy.batch_by_padded.v1"
discard_oversize = true
size = 2000
buffer = 256
get_length = null

[training.logger]
@loggers = "spacy.WandbLogger.v3"
project_name = "med12"
remove_config_values = ["paths.train","paths.dev","corpora.train.path","corpora.dev.path"]
log_dataset_dir = "./corpus"
model_log_interval = 1000
entity = null
run_name = null

[training.optimizer]
@optimizers = "Adam.v1"
beta1 = 0.9
beta2 = 0.999
L2_is_weight_decay = true
L2 = 0.01
grad_clip = 1.0
use_averages = false
eps = 0.00000001

[training.optimizer.learn_rate]
@schedules = "warmup_linear.v1"
warmup_steps = 250
total_steps = 20000
initial_rate = 0.00005

[training.score_weights]
ents_f = 0.5
ents_p = 0.0
ents_r = 0.0
ents_per_type = null
cats_score = 0.5
cats_score_desc = null
cats_micro_p = null
cats_micro_r = null
cats_micro_f = null
cats_macro_p = null
cats_macro_r = null
cats_macro_f = null
cats_macro_auc = null
cats_f_per_type = null
cats_macro_auc_per_type = null

[pretraining]

[initialize]
vectors = ${paths.vectors}
init_tok2vec = ${paths.init_tok2vec}
vocab_data = null
lookups = null
before_init = null
after_init = null

[initialize.components]

[initialize.components.ner]

[initialize.components.ner.labels]
@readers = "spacy.read_labels.v1"
path = "C:\\Users\\karl2\\Documents\\medication_parsing\\rxnorm_model_development\\models\\roberta_weak_rw\\labels\\ner.json"
require = false

[initialize.components.textcat]

[initialize.components.textcat.labels]
@readers = "spacy.read_labels.v1"
path = "C:\\Users\\karl2\\Documents\\medication_parsing\\rxnorm_model_development\\models\\roberta_weak_rw\\labels\\textcat.json"
require = false

[initialize.tokenizer]