monai
medical
katielink commited on
Commit
41526c1
·
1 Parent(s): dd88eb7

modify dataset key name

Browse files
configs/inference.json CHANGED
@@ -7,8 +7,8 @@
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  "ckpt_dir": "$@bundle_root + '/models'",
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  "output_dir": "$@bundle_root + '/eval'",
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  "data_list_file_path": "$@bundle_root + '/configs/datalist.json'",
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- "data_file_base_dir": "/workspace/data/medical/brats2018challenge",
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- "test_datalist": "$monai.data.load_decathlon_datalist(@data_list_file_path, data_list_key='testing', base_dir=@data_file_base_dir)",
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  "device": "$torch.device('cuda:0' if torch.cuda.is_available() else 'cpu')",
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  "amp": true,
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  "network_def": {
 
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  "ckpt_dir": "$@bundle_root + '/models'",
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  "output_dir": "$@bundle_root + '/eval'",
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  "data_list_file_path": "$@bundle_root + '/configs/datalist.json'",
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+ "dataset_dir": "/workspace/data/medical/brats2018challenge",
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+ "test_datalist": "$monai.data.load_decathlon_datalist(@data_list_file_path, data_list_key='testing', base_dir=@dataset_dir)",
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  "device": "$torch.device('cuda:0' if torch.cuda.is_available() else 'cpu')",
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  "amp": true,
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  "network_def": {
configs/metadata.json CHANGED
@@ -1,7 +1,8 @@
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  {
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  "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
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- "version": "0.3.7",
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  "changelog": {
 
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  "0.3.7": "restructure readme to match updated template",
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  "0.3.6": "added train/val graphs",
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  "0.3.5": "update prepare datalist function",
 
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  {
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  "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
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+ "version": "0.3.8",
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  "changelog": {
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+ "0.3.8": "modify dataset key name",
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  "0.3.7": "restructure readme to match updated template",
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  "0.3.6": "added train/val graphs",
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  "0.3.5": "update prepare datalist function",
configs/train.json CHANGED
@@ -7,9 +7,9 @@
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  "ckpt_dir": "$@bundle_root + '/models'",
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  "output_dir": "$@bundle_root + '/eval'",
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  "data_list_file_path": "$@bundle_root + '/configs/datalist.json'",
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- "data_file_base_dir": "/workspace/data/medical/brats2018challenge",
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- "train_datalist": "$monai.data.load_decathlon_datalist(@data_list_file_path, data_list_key='training', base_dir=@data_file_base_dir)",
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- "val_datalist": "$monai.data.load_decathlon_datalist(@data_list_file_path, data_list_key='validation', base_dir=@data_file_base_dir)",
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  "device": "$torch.device('cuda:0' if torch.cuda.is_available() else 'cpu')",
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  "epochs": 300,
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  "val_interval": 1,
 
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  "ckpt_dir": "$@bundle_root + '/models'",
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  "output_dir": "$@bundle_root + '/eval'",
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  "data_list_file_path": "$@bundle_root + '/configs/datalist.json'",
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+ "dataset_dir": "/workspace/data/medical/brats2018challenge",
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+ "train_datalist": "$monai.data.load_decathlon_datalist(@data_list_file_path, data_list_key='training', base_dir=@dataset_dir)",
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+ "val_datalist": "$monai.data.load_decathlon_datalist(@data_list_file_path, data_list_key='validation', base_dir=@dataset_dir)",
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  "device": "$torch.device('cuda:0' if torch.cuda.is_available() else 'cpu')",
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  "epochs": 300,
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  "val_interval": 1,