monai
medical
katielink commited on
Commit
dab3954
·
1 Parent(s): 6ee0257

update output format of inference

Browse files
Files changed (2) hide show
  1. configs/inference.json +10 -1
  2. configs/metadata.json +2 -1
configs/inference.json CHANGED
@@ -89,11 +89,20 @@
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  "keys": "pred",
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  "threshold": 0.5
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  },
 
 
 
 
 
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  {
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  "_target_": "SaveImaged",
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  "keys": "pred",
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  "meta_keys": "pred_meta_dict",
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- "output_dir": "@output_dir"
 
 
 
 
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  }
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  ]
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  },
 
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  "keys": "pred",
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  "threshold": 0.5
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  },
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+ {
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+ "_target_": "Lambdad",
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+ "keys": "pred",
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+ "func": "$lambda x: torch.where(x[[2]] > 0, 4, torch.where(x[[0]] > 0, 1, torch.where(x[[1]] > 0, 2, 0)))"
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+ },
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  {
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  "_target_": "SaveImaged",
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  "keys": "pred",
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  "meta_keys": "pred_meta_dict",
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+ "output_dir": "@output_dir",
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+ "output_postfix": "seg",
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+ "output_dtype": "uint8",
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+ "resample": false,
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+ "squeeze_end_dims": true
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  }
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  ]
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  },
configs/metadata.json CHANGED
@@ -1,7 +1,8 @@
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  {
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  "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
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- "version": "0.3.3",
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  "changelog": {
 
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  "0.3.3": "update to use monai 1.0.1",
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  "0.3.2": "enhance readme on commands example",
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  "0.3.1": "fix license Copyright error",
 
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  {
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  "schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
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+ "version": "0.3.4",
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  "changelog": {
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+ "0.3.4": "update output format of inference",
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  "0.3.3": "update to use monai 1.0.1",
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  "0.3.2": "enhance readme on commands example",
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  "0.3.1": "fix license Copyright error",