| validate#postprocessing: | |
| _target_: Compose | |
| transforms: | |
| - _target_: Activationsd | |
| keys: pred | |
| softmax: true | |
| - _target_: Invertd | |
| keys: | |
| - pred | |
| - label | |
| transform: "@validate#preprocessing" | |
| orig_keys: image | |
| meta_key_postfix: meta_dict | |
| nearest_interp: | |
| - false | |
| - true | |
| to_tensor: true | |
| - _target_: AsDiscreted | |
| keys: | |
| - pred | |
| - label | |
| argmax: | |
| - true | |
| - false | |
| to_onehot: 3 | |
| - _target_: CopyItemsd | |
| keys: "pred" | |
| times: 1 | |
| names: "pred_save" | |
| - _target_: AsDiscreted | |
| keys: | |
| - pred_save | |
| argmax: | |
| - true | |
| - _target_: SaveImaged | |
| keys: pred_save | |
| meta_keys: pred_meta_dict | |
| output_dir: "@output_dir" | |
| resample: false | |
| squeeze_end_dims: true | |
| validate#dataset: | |
| _target_: Dataset | |
| data: "@val_datalist" | |
| transform: "@validate#preprocessing" | |
| validate#handlers: | |
| - _target_: CheckpointLoader | |
| load_path: "$@ckpt_dir + '/model.pt'" | |
| load_dict: | |
| model: "@network" | |
| - _target_: StatsHandler | |
| iteration_log: false | |
| - _target_: MetricsSaver | |
| save_dir: "@output_dir" | |
| metrics: | |
| - val_mean_dice | |
| - val_acc | |
| metric_details: | |
| - val_mean_dice | |
| batch_transform: "$monai.handlers.from_engine(['image_meta_dict'])" | |
| summary_ops: "*" | |
| evaluating: | |
| - "$setattr(torch.backends.cudnn, 'benchmark', True)" | |
| - "$@validate#evaluator.run()" | |