add cpu ram requirement in readme
Browse files- README.md +12 -1
- configs/metadata.json +2 -1
- docs/README.md +12 -1
README.md
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@@ -46,7 +46,6 @@ The training was performed with the following:
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- Optimizer: SGD
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- (Initial) Learning Rate: 0.025
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- Loss: DiceCELoss
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- Note: If out-of-memory or program crash occurs while caching the data set, please change the cache\_rate in CacheDataset to a lower value in the range (0, 1).
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The segmentation of pancreas region is formulated as the voxel-wise 3-class classification. Each voxel is predicted as either foreground (pancreas body, tumour) or background. And the model is optimized with gradient descent method minimizing soft dice loss and cross-entropy loss between the predicted mask and ground truth segmentation.
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- Label 1: pancreas
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- Label 0: everything else
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## Performance
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Dice score is used for evaluating the performance of the model. This model achieves a mean dice score of 0.62.
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```
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# References
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[1] He, Y., Yang, D., Roth, H., Zhao, C. and Xu, D., 2021. Dints: Differentiable neural network topology search for 3d medical image segmentation. In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (pp. 5841-5850).
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# License
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- Optimizer: SGD
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- (Initial) Learning Rate: 0.025
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- Loss: DiceCELoss
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The segmentation of pancreas region is formulated as the voxel-wise 3-class classification. Each voxel is predicted as either foreground (pancreas body, tumour) or background. And the model is optimized with gradient descent method minimizing soft dice loss and cross-entropy loss between the predicted mask and ground truth segmentation.
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- Label 1: pancreas
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- Label 0: everything else
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### Memory Consumption
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- Dataset Manager: CacheDataset
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- Data Size: 420 3D Volumes
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- Cache Rate: 1.0
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- Multi GPU (8 GPUs) - System RAM Usage: 400G
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### Memory Consumption Warning
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If you face memory issues with CacheDataset, you can either switch to a regular Dataset class or lower the caching rate `cache_rate` in the configurations within range $(0, 1)$ to minimize the System RAM requirements.
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## Performance
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Dice score is used for evaluating the performance of the model. This model achieves a mean dice score of 0.62.
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```
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# References
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[1] He, Y., Yang, D., Roth, H., Zhao, C. and Xu, D., 2021. Dints: Differentiable neural network topology search for 3d medical image segmentation. In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (pp. 5841-5850).
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# License
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configs/metadata.json
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{
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"schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
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"version": "0.3.
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"changelog": {
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"0.3.8": "add non-deterministic note",
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"0.3.7": "re-train model with updated dints implementation",
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"0.3.6": "black autofix format and add name tag",
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{
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"schema": "https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/meta_schema_20220324.json",
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"version": "0.3.9",
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"changelog": {
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"0.3.9": "add cpu ram requirement in readme",
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"0.3.8": "add non-deterministic note",
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"0.3.7": "re-train model with updated dints implementation",
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"0.3.6": "black autofix format and add name tag",
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docs/README.md
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@@ -39,7 +39,6 @@ The training was performed with the following:
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- Optimizer: SGD
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- (Initial) Learning Rate: 0.025
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- Loss: DiceCELoss
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-
- Note: If out-of-memory or program crash occurs while caching the data set, please change the cache\_rate in CacheDataset to a lower value in the range (0, 1).
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The segmentation of pancreas region is formulated as the voxel-wise 3-class classification. Each voxel is predicted as either foreground (pancreas body, tumour) or background. And the model is optimized with gradient descent method minimizing soft dice loss and cross-entropy loss between the predicted mask and ground truth segmentation.
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- Label 1: pancreas
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- Label 0: everything else
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## Performance
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Dice score is used for evaluating the performance of the model. This model achieves a mean dice score of 0.62.
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```
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# References
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[1] He, Y., Yang, D., Roth, H., Zhao, C. and Xu, D., 2021. Dints: Differentiable neural network topology search for 3d medical image segmentation. In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (pp. 5841-5850).
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# License
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- Optimizer: SGD
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- (Initial) Learning Rate: 0.025
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- Loss: DiceCELoss
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The segmentation of pancreas region is formulated as the voxel-wise 3-class classification. Each voxel is predicted as either foreground (pancreas body, tumour) or background. And the model is optimized with gradient descent method minimizing soft dice loss and cross-entropy loss between the predicted mask and ground truth segmentation.
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- Label 1: pancreas
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- Label 0: everything else
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### Memory Consumption
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- Dataset Manager: CacheDataset
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- Data Size: 420 3D Volumes
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- Cache Rate: 1.0
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- Multi GPU (8 GPUs) - System RAM Usage: 400G
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### Memory Consumption Warning
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If you face memory issues with CacheDataset, you can either switch to a regular Dataset class or lower the caching rate `cache_rate` in the configurations within range $(0, 1)$ to minimize the System RAM requirements.
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## Performance
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Dice score is used for evaluating the performance of the model. This model achieves a mean dice score of 0.62.
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```
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# References
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[1] He, Y., Yang, D., Roth, H., Zhao, C. and Xu, D., 2021. Dints: Differentiable neural network topology search for 3d medical image segmentation. In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (pp. 5841-5850).
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# License
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