Upload folder using huggingface_hub

accuracies.json

@@ -1,4 +1,4 @@
 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| macrophage | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| pulmonary alveolar type 2 cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| basal cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| non-classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| capillary endothelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| club cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| basophil | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| CD4-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| respiratory goblet cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| lung ciliated cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| vein endothelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| lung microvascular endothelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| CD8-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| fibroblast | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| adventitial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| endothelial cell of artery | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| pulmonary alveolar type 1 cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| neutrophil | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| pericyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| effector CD8-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| effector CD4-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| bronchial smooth muscle cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasma cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| smooth muscle cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| endothelial cell of lymphatic vessel | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| pulmonary ionocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| macrophage | 370 | 0.94 | 0.92 | 0.94 | 0.95 | 0.00 | 0.88 | 0.96 | 0.88 | 0.96 |\n| pulmonary alveolar type 2 cell | 247 | 0.97 | 0.81 | 0.93 | 0.95 | 0.00 | 0.07 | 0.99 | 0.97 | 0.98 |\n| basal cell | 60 | 0.78 | 0.21 | 0.82 | 0.77 | 0.00 | 0.66 | 0.92 | 0.92 | 0.93 |\n| non-classical monocyte | 34 | 0.42 | 0.00 | 0.25 | 0.47 | 0.00 | 0.00 | 0.71 | 0.47 | 0.67 |\n| capillary endothelial cell | 33 | 0.78 | 0.65 | 0.90 | 0.86 | 0.00 | 0.57 | 1.00 | 0.97 | 0.89 |\n| club cell | 32 | 0.81 | 0.00 | 0.67 | 0.78 | 0.00 | 0.19 | 0.93 | 0.83 | 0.92 |\n| classical monocyte | 27 | 0.67 | 0.50 | 0.74 | 0.64 | 0.00 | 0.00 | 0.98 | 0.89 | 0.92 |\n| basophil | 23 | 0.93 | 0.89 | 0.90 | 0.79 | 0.00 | 0.28 | 1.00 | 1.00 | 0.98 |\n| CD4-positive, alpha-beta T cell | 20 | 0.56 | 0.29 | 0.67 | 0.67 | 0.00 | 0.70 | 1.00 | 0.98 | 0.79 |\n| respiratory goblet cell | 18 | 0.51 | 0.42 | 0.83 | 0.61 | 0.00 | 0.00 | 0.86 | 0.86 | 0.91 |\n| lung ciliated cell | 15 | 0.86 | 0.85 | 0.85 | 0.46 | 0.00 | 0.27 | 1.00 | 0.97 | 0.97 |\n| vein endothelial cell | 14 | 0.35 | 0.44 | 0.75 | 0.44 | 0.00 | 0.00 | 1.00 | 0.97 | 0.73 |\n| lung microvascular endothelial cell | 14 | 0.82 | 0.35 | 0.90 | 0.61 | 0.00 | 0.12 | 1.00 | 1.00 | 0.90 |\n| CD8-positive, alpha-beta T cell | 12 | 0.29 | 0.00 | 0.53 | 0.64 | 0.00 | 0.29 | 1.00 | 1.00 | 0.80 |\n| fibroblast | 11 | 0.57 | 0.53 | 0.70 | 0.48 | 0.00 | 0.00 | 1.00 | 0.96 | 1.00 |\n| intermediate monocyte | 9 | 0.00 | 0.00 | 0.71 | 0.33 | 0.00 | 0.00 | 0.95 | 0.90 | 0.80 |\n| adventitial cell | 9 | 0.82 | 0.00 | 0.70 | 0.73 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |\n| endothelial cell of artery | 8 | 0.00 | 0.00 | 0.67 | 0.47 | 0.00 | 0.00 | 1.00 | 1.00 | 0.77 |\n| pulmonary alveolar type 1 cell | 8 | 0.46 | 0.00 | 0.55 | 0.31 | 0.00 | 0.00 | 0.89 | 0.73 | 0.62 |\n| neutrophil | 7 | 0.86 | 0.25 | 0.83 | 0.83 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |\n| dendritic cell | 6 | 0.40 | 0.29 | 0.25 | 0.29 | 0.00 | 0.00 | 1.00 | 0.71 | 0.67 |\n| pericyte | 6 | 0.86 | 0.00 | 0.75 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |\n| effector CD8-positive, alpha-beta T cell | 3 | 0.00 | 0.00 | 0.57 | 0.40 | 0.00 | 0.00 | 1.00 | 1.00 | 0.50 |\n| effector CD4-positive, alpha-beta T cell | 3 | 0.00 | 0.00 | 0.00 | 0.57 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |\n| bronchial smooth muscle cell | 3 | 0.00 | 0.00 | 0.50 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |\n| plasma cell | 2 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |\n| smooth muscle cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |\n| endothelial cell of lymphatic vessel | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 |\n| mature NK T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 |\n| pulmonary ionocyte | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 |\n| B cell | 1 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |"
+    "query_accuracy": "| Cell Type | N cells |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- |\n| macrophage | 0 | 0.00 | 0.00 | 0.00 |\n| pulmonary alveolar type 2 cell | 0 | 0.00 | 0.00 | 0.00 |\n| basal cell | 0 | 0.00 | 0.00 | 0.00 |\n| non-classical monocyte | 0 | 0.00 | 0.00 | 0.00 |\n| capillary endothelial cell | 0 | 0.00 | 0.00 | 0.00 |\n| club cell | 0 | 0.00 | 0.00 | 0.00 |\n| classical monocyte | 0 | 0.00 | 0.00 | 0.00 |\n| basophil | 0 | 0.00 | 0.00 | 0.00 |\n| CD4-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 |\n| respiratory goblet cell | 0 | 0.00 | 0.00 | 0.00 |\n| lung ciliated cell | 0 | 0.00 | 0.00 | 0.00 |\n| vein endothelial cell | 0 | 0.00 | 0.00 | 0.00 |\n| lung microvascular endothelial cell | 0 | 0.00 | 0.00 | 0.00 |\n| CD8-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 |\n| fibroblast | 0 | 0.00 | 0.00 | 0.00 |\n| intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 |\n| adventitial cell | 0 | 0.00 | 0.00 | 0.00 |\n| endothelial cell of artery | 0 | 0.00 | 0.00 | 0.00 |\n| pulmonary alveolar type 1 cell | 0 | 0.00 | 0.00 | 0.00 |\n| neutrophil | 0 | 0.00 | 0.00 | 0.00 |\n| dendritic cell | 0 | 0.00 | 0.00 | 0.00 |\n| pericyte | 0 | 0.00 | 0.00 | 0.00 |\n| effector CD8-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 |\n| effector CD4-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 |\n| bronchial smooth muscle cell | 0 | 0.00 | 0.00 | 0.00 |\n| plasma cell | 0 | 0.00 | 0.00 | 0.00 |\n| smooth muscle cell | 0 | 0.00 | 0.00 | 0.00 |\n| endothelial cell of lymphatic vessel | 0 | 0.00 | 0.00 | 0.00 |\n| mature NK T cell | 0 | 0.00 | 0.00 | 0.00 |\n| pulmonary ionocyte | 0 | 0.00 | 0.00 | 0.00 |\n| B cell | 0 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- |\n| macrophage | 370 | 0.96 | 0.88 | 0.96 |\n| pulmonary alveolar type 2 cell | 247 | 0.99 | 0.97 | 0.98 |\n| basal cell | 60 | 0.92 | 0.92 | 0.95 |\n| non-classical monocyte | 34 | 0.71 | 0.47 | 0.71 |\n| capillary endothelial cell | 33 | 1.00 | 0.97 | 0.98 |\n| club cell | 32 | 0.93 | 0.83 | 0.94 |\n| classical monocyte | 27 | 0.98 | 0.89 | 0.98 |\n| basophil | 23 | 1.00 | 1.00 | 1.00 |\n| CD4-positive, alpha-beta T cell | 20 | 1.00 | 0.98 | 0.98 |\n| respiratory goblet cell | 18 | 0.86 | 0.86 | 0.88 |\n| lung ciliated cell | 15 | 1.00 | 0.97 | 1.00 |\n| vein endothelial cell | 14 | 1.00 | 0.97 | 0.97 |\n| lung microvascular endothelial cell | 14 | 1.00 | 1.00 | 1.00 |\n| CD8-positive, alpha-beta T cell | 12 | 1.00 | 1.00 | 1.00 |\n| fibroblast | 11 | 1.00 | 0.96 | 1.00 |\n| intermediate monocyte | 9 | 0.95 | 0.90 | 0.95 |\n| adventitial cell | 9 | 1.00 | 1.00 | 1.00 |\n| endothelial cell of artery | 8 | 1.00 | 1.00 | 1.00 |\n| pulmonary alveolar type 1 cell | 8 | 0.89 | 0.73 | 0.70 |\n| neutrophil | 7 | 1.00 | 1.00 | 1.00 |\n| dendritic cell | 6 | 1.00 | 0.71 | 1.00 |\n| pericyte | 6 | 1.00 | 1.00 | 1.00 |\n| effector CD8-positive, alpha-beta T cell | 3 | 1.00 | 1.00 | 1.00 |\n| effector CD4-positive, alpha-beta T cell | 3 | 1.00 | 1.00 | 1.00 |\n| bronchial smooth muscle cell | 3 | 1.00 | 1.00 | 1.00 |\n| plasma cell | 2 | 1.00 | 1.00 | 1.00 |\n| smooth muscle cell | 2 | 1.00 | 1.00 | 1.00 |\n| endothelial cell of lymphatic vessel | 1 | 1.00 | 1.00 | 1.00 |\n| mature NK T cell | 1 | 1.00 | 1.00 | 1.00 |\n| pulmonary ionocyte | 1 | 1.00 | 1.00 | 1.00 |\n| B cell | 1 | 1.00 | 1.00 | 1.00 |"
 }

svm_classifier_cuml.joblib

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:beae913cca5f1d19346e50a9bb95dbe8bb21cfe792f0b014b6d0311b90229be3
+oid sha256:36309d01ef5c7dad9a2adcb4b307643b37c95546a4508b06cf6ca2bf1dbe087a
 size 529883