Commit
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Parent(s):
ea2c092
ner model
Browse files- README.md +19 -0
- config.json +43 -0
- pytorch_model.bin +3 -0
- special_tokens_map.json +1 -0
- tokenizer_config.json +1 -0
- vocab.txt +0 -0
README.md
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---
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language: "pt"
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widget:
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- text: "Dispneia venoso central em subclavia D duplolumen recebendo solução salina e glicosada em BI."
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- text: "Paciente com Sepse pulmonar em D8 tazocin (paciente não recebeu por 2 dias Atb)."
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- text: "FOI REALIZADO CURSO DE ATB COM LEVOFLOXACINA POR 7 DIAS."
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datasets:
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- SemClinBr
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thumbnail: "https://raw.githubusercontent.com/HAILab-PUCPR/BioBERTpt/master/images/logo-biobertpr1.png"
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---
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# Portuguese Clinical NER - Disorder
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The Disorder NER model is part of the [BioBERTpt project](https://www.aclweb.org/anthology/2020.clinicalnlp-1.7/), where 13 models of clinical entities (compatible with UMLS) were trained. All NER model from "pucpr" user was trained from the Brazilian clinical corpus [SemClinBr](https://github.com/HAILab-PUCPR/SemClinBr), with 10 epochs and IOB2 format, from BioBERTpt(all) model.
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## Questions?
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Post a Github issue on the [BioBERTpt repo](https://github.com/HAILab-PUCPR/BioBERTpt).
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config.json
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{
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"_name_or_path": "pucpr/biobertpt-all",
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"_num_labels": 2,
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"architectures": [
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"BertForTokenClassification"
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],
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"attention_probs_dropout_prob": 0.1,
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"directionality": "bidi",
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"eos_token_ids": null,
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"gradient_checkpointing": false,
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"hidden_act": "gelu",
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"hidden_dropout_prob": 0.1,
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"hidden_size": 768,
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"id2label": {
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"0": "O",
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"1": "B-Disorder",
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"2": "I-Disorder"
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},
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"initializer_range": 0.02,
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"intermediate_size": 3072,
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"label2id": {
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"O": 0,
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"B-Disorder": 1,
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"I-Disorder": 2
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},
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"layer_norm_eps": 1e-12,
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"max_position_embeddings": 512,
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"model_type": "bert",
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"num_attention_heads": 12,
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"num_hidden_layers": 12,
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"output_past": true,
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"pad_token_id": null,
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"pooler_fc_size": 768,
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"pooler_num_attention_heads": 12,
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"pooler_num_fc_layers": 3,
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"pooler_size_per_head": 128,
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"pooler_type": "first_token_transform",
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"position_embedding_type": "absolute",
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"transformers_version": "4.8.2",
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"type_vocab_size": 2,
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"use_cache": true,
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"vocab_size": 119547
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}
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pytorch_model.bin
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version https://git-lfs.github.com/spec/v1
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oid sha256:352539aced8c8b96f973541b738de79710c8c2c3c3558a06996262710744842f
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size 709144049
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special_tokens_map.json
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{"unk_token": "[UNK]", "sep_token": "[SEP]", "pad_token": "[PAD]", "cls_token": "[CLS]", "mask_token": "[MASK]"}
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tokenizer_config.json
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{"do_lower_case": true, "max_len": 512, "unk_token": "[UNK]", "sep_token": "[SEP]", "pad_token": "[PAD]", "cls_token": "[CLS]", "mask_token": "[MASK]"}
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vocab.txt
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