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scvi-tools
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tabula-sapiens-fat-scvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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@@ -51,10 +51,10 @@ space might still be useful for analysis.
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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- | Mean Absolute Error | 1.28 | 1.41 |
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- | Pearson Correlation | 0.83 | 0.79 |
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  | Spearman Correlation | 0.82 | 0.81 |
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- | R² (R-Squared) | 0.64 | 0.52 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
@@ -63,10 +63,10 @@ preserved by the generated model expression. This value is usually quite high.
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  | Metric | Training Value |
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  |-------------------------|----------------|
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- | Mean Absolute Error | 18.96 |
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  | Pearson Correlation | 0.63 |
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  | Spearman Correlation | 0.65 |
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- | R² (R-Squared) | -1.70 |
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  </details>
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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- | fibroblast | 0.96 | 0.44 | 0.79 | 0.98 | 0.36 | 0.92 | 8459.00 |
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- | endothelial cell | 0.89 | 0.64 | 0.77 | 0.97 | 0.43 | 0.92 | 3748.00 |
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- | macrophage | 0.87 | 0.60 | 0.81 | 0.97 | 0.41 | 0.92 | 2807.00 |
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- | T cell | 0.93 | 1.52 | 0.65 | 0.89 | 0.26 | 0.86 | 1715.00 |
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- | mesenchymal stem cell | 0.92 | 1.04 | 0.69 | 0.95 | 0.41 | 0.89 | 1311.00 |
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- | myofibroblast cell | 0.93 | 1.37 | 0.73 | 0.90 | 0.28 | 0.82 | 982.00 |
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- | mature NK T cell | 0.88 | 2.57 | 0.62 | 0.84 | 0.29 | 0.81 | 572.00 |
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- | neutrophil | 0.88 | 3.21 | 0.67 | 0.75 | 0.20 | 0.92 | 440.00 |
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- | leukocyte | 0.49 | 4.86 | 0.52 | 0.67 | 0.18 | 0.73 | 160.00 |
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- | plasma cell | 0.68 | 5.13 | 0.52 | 0.56 | 0.27 | 0.75 | 26.00 |
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- | B cell | 0.20 | 9.70 | 0.37 | 0.39 | 0.20 | 0.72 | 23.00 |
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- | smooth muscle cell | 0.76 | 5.67 | 0.56 | 0.53 | 0.33 | 0.66 | 16.00 |
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  </details>
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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+ | Mean Absolute Error | 1.27 | 1.40 |
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+ | Pearson Correlation | 0.84 | 0.79 |
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  | Spearman Correlation | 0.82 | 0.81 |
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+ | R² (R-Squared) | 0.64 | 0.53 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
 
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  | Metric | Training Value |
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  |-------------------------|----------------|
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+ | Mean Absolute Error | 19.16 |
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  | Pearson Correlation | 0.63 |
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  | Spearman Correlation | 0.65 |
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+ | R² (R-Squared) | -1.72 |
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  </details>
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | fibroblast | 0.95 | 0.41 | 0.84 | 0.98 | 0.36 | 0.92 | 8459.00 |
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+ | endothelial cell | 0.89 | 0.63 | 0.78 | 0.97 | 0.43 | 0.92 | 3748.00 |
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+ | macrophage | 0.87 | 0.63 | 0.76 | 0.97 | 0.41 | 0.92 | 2807.00 |
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+ | T cell | 0.94 | 1.51 | 0.65 | 0.90 | 0.26 | 0.86 | 1715.00 |
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+ | mesenchymal stem cell | 0.92 | 0.96 | 0.74 | 0.95 | 0.41 | 0.89 | 1311.00 |
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+ | myofibroblast cell | 0.94 | 1.49 | 0.70 | 0.90 | 0.28 | 0.82 | 982.00 |
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+ | mature NK T cell | 0.87 | 2.52 | 0.62 | 0.83 | 0.29 | 0.81 | 572.00 |
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+ | neutrophil | 0.92 | 3.08 | 0.68 | 0.75 | 0.21 | 0.92 | 440.00 |
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+ | leukocyte | 0.52 | 4.84 | 0.52 | 0.67 | 0.18 | 0.73 | 160.00 |
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+ | plasma cell | 0.73 | 5.13 | 0.52 | 0.57 | 0.26 | 0.75 | 26.00 |
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+ | B cell | 0.19 | 9.35 | 0.40 | 0.41 | 0.19 | 0.72 | 23.00 |
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+ | smooth muscle cell | 0.76 | 5.80 | 0.54 | 0.52 | 0.32 | 0.66 | 16.00 |
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  </details>
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