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scvi-tools
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tabula-sapiens-lymph_node-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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@@ -54,10 +54,10 @@ space might still be useful for analysis.
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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- | Mean Absolute Error | 1.61 | 1.61 |
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- | Pearson Correlation | 0.81 | 0.80 |
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  | Spearman Correlation | 0.74 | 0.74 |
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- | R² (R-Squared) | 0.31 | 0.27 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
@@ -66,10 +66,10 @@ preserved by the generated model expression. This value is usually quite high.
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  | Metric | Training Value |
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  |-------------------------|----------------|
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- | Mean Absolute Error | 24.22 |
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- | Pearson Correlation | 0.68 |
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  | Spearman Correlation | 0.76 |
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- | R² (R-Squared) | -0.51 |
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  </details>
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@@ -86,28 +86,28 @@ cell-type.
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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- | B cell | 0.97 | 0.59 | 0.77 | 0.97 | 0.30 | 0.87 | 15249.00 |
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- | effector CD4-positive, alpha-beta T cell | 0.90 | 0.97 | 0.65 | 0.90 | 0.27 | 0.77 | 6908.00 |
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- | effector CD8-positive, alpha-beta T cell | 0.96 | 1.24 | 0.58 | 0.89 | 0.27 | 0.78 | 5860.00 |
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- | T cell | 0.89 | 1.55 | 0.54 | 0.85 | 0.25 | 0.71 | 3848.00 |
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- | type I NK T cell | 0.92 | 1.57 | 0.56 | 0.85 | 0.29 | 0.71 | 3758.00 |
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- | plasma cell | 0.89 | 0.83 | 0.75 | 0.95 | 0.35 | 0.91 | 2426.00 |
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- | innate lymphoid cell | 0.73 | 1.64 | 0.50 | 0.78 | 0.25 | 0.58 | 2052.00 |
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- | macrophage | 0.76 | 1.65 | 0.73 | 0.93 | 0.45 | 0.88 | 1086.00 |
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- | regulatory T cell | 0.86 | 2.72 | 0.60 | 0.77 | 0.40 | 0.71 | 881.00 |
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- | mature NK T cell | 0.87 | 3.56 | 0.60 | 0.68 | 0.39 | 0.65 | 437.00 |
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- | classical monocyte | 0.85 | 3.92 | 0.64 | 0.72 | 0.46 | 0.76 | 161.00 |
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- | endothelial cell | 0.70 | 2.88 | 0.72 | 0.85 | 0.58 | 0.85 | 143.00 |
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- | intermediate monocyte | 0.75 | 3.83 | 0.64 | 0.74 | 0.50 | 0.78 | 134.00 |
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- | mast cell | 0.84 | 4.67 | 0.63 | 0.65 | 0.36 | 0.74 | 119.00 |
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- | stromal cell | 0.72 | 3.11 | 0.75 | 0.84 | 0.52 | 0.85 | 111.00 |
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- | neutrophil | 0.87 | 5.21 | 0.57 | 0.55 | 0.41 | 0.83 | 107.00 |
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- | CD1c-positive myeloid dendritic cell | 0.69 | 3.71 | 0.69 | 0.75 | 0.51 | 0.79 | 68.00 |
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- | CD141-positive myeloid dendritic cell | 0.64 | 4.55 | 0.62 | 0.63 | 0.49 | 0.76 | 48.00 |
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- | hematopoietic stem cell | 0.52 | 5.10 | 0.57 | 0.54 | 0.47 | 0.67 | 34.00 |
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- | non-classical monocyte | 0.69 | 5.52 | 0.56 | 0.54 | 0.42 | 0.70 | 31.00 |
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- | erythrocyte | 0.67 | 6.22 | 0.46 | 0.39 | 0.38 | 0.79 | 24.00 |
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- | mature conventional dendritic cell | 0.57 | 6.42 | 0.50 | 0.43 | 0.38 | 0.63 | 17.00 |
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  </details>
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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+ | Mean Absolute Error | 1.61 | 1.60 |
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+ | Pearson Correlation | 0.81 | 0.81 |
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  | Spearman Correlation | 0.74 | 0.74 |
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+ | R² (R-Squared) | 0.33 | 0.29 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
 
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  | Metric | Training Value |
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  |-------------------------|----------------|
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+ | Mean Absolute Error | 24.05 |
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+ | Pearson Correlation | 0.69 |
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  | Spearman Correlation | 0.76 |
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+ | R² (R-Squared) | -0.48 |
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  </details>
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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+ | B cell | 0.94 | 0.61 | 0.75 | 0.97 | 0.30 | 0.87 | 15249.00 |
90
+ | effector CD4-positive, alpha-beta T cell | 0.88 | 1.08 | 0.57 | 0.89 | 0.26 | 0.77 | 6908.00 |
91
+ | effector CD8-positive, alpha-beta T cell | 0.97 | 1.34 | 0.52 | 0.89 | 0.27 | 0.77 | 5860.00 |
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+ | T cell | 0.87 | 1.68 | 0.48 | 0.83 | 0.24 | 0.71 | 3848.00 |
93
+ | type I NK T cell | 0.91 | 1.55 | 0.56 | 0.84 | 0.30 | 0.71 | 3758.00 |
94
+ | plasma cell | 0.89 | 0.83 | 0.76 | 0.95 | 0.36 | 0.91 | 2426.00 |
95
+ | innate lymphoid cell | 0.78 | 1.64 | 0.48 | 0.77 | 0.25 | 0.58 | 2052.00 |
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+ | macrophage | 0.78 | 1.71 | 0.72 | 0.92 | 0.46 | 0.89 | 1086.00 |
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+ | regulatory T cell | 0.90 | 2.76 | 0.59 | 0.76 | 0.40 | 0.71 | 881.00 |
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+ | mature NK T cell | 0.89 | 3.74 | 0.57 | 0.66 | 0.39 | 0.65 | 437.00 |
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+ | classical monocyte | 0.80 | 3.83 | 0.65 | 0.73 | 0.44 | 0.75 | 161.00 |
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+ | endothelial cell | 0.72 | 2.75 | 0.74 | 0.86 | 0.57 | 0.85 | 143.00 |
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+ | intermediate monocyte | 0.73 | 4.00 | 0.63 | 0.74 | 0.51 | 0.79 | 134.00 |
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+ | mast cell | 0.85 | 4.91 | 0.61 | 0.63 | 0.36 | 0.74 | 119.00 |
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+ | stromal cell | 0.69 | 3.22 | 0.74 | 0.84 | 0.52 | 0.85 | 111.00 |
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+ | neutrophil | 0.87 | 5.11 | 0.58 | 0.55 | 0.41 | 0.84 | 107.00 |
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+ | CD1c-positive myeloid dendritic cell | 0.70 | 3.91 | 0.67 | 0.75 | 0.51 | 0.79 | 68.00 |
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+ | CD141-positive myeloid dendritic cell | 0.67 | 4.59 | 0.62 | 0.63 | 0.47 | 0.75 | 48.00 |
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+ | hematopoietic stem cell | 0.52 | 4.99 | 0.58 | 0.54 | 0.46 | 0.67 | 34.00 |
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+ | non-classical monocyte | 0.73 | 5.49 | 0.56 | 0.54 | 0.42 | 0.70 | 31.00 |
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+ | erythrocyte | 0.66 | 6.45 | 0.45 | 0.37 | 0.37 | 0.79 | 24.00 |
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+ | mature conventional dendritic cell | 0.56 | 6.27 | 0.51 | 0.45 | 0.37 | 0.62 | 17.00 |
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  </details>
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