martinkim0 commited on
Commit
e07ff49
1 Parent(s): 25a8b7f

Upload README.md with huggingface_hub

Browse files
Files changed (1) hide show
  1. README.md +8 -8
README.md CHANGED
@@ -6,8 +6,8 @@ tags:
6
  - genomics
7
  - single-cell
8
  - model_cls_name:SCVI
9
- - scvi_version:0.20.0
10
- - anndata_version:0.8.0
11
  - modality:rna
12
  - tissue:Salivary_Gland
13
  - annotated:True
@@ -15,7 +15,7 @@ tags:
15
 
16
  # Description
17
 
18
- Tabula sapiens. An across organ dataset of cell-types in human tissues.
19
 
20
  # Model properties
21
 
@@ -53,10 +53,10 @@ Many model properties are in the model tags. Some more are listed below.
53
  | Summary Stat Key | Value |
54
  |--------------------------|-------|
55
  | n_batch | 4 |
56
- | n_cells | 13488 |
57
  | n_extra_categorical_covs | 0 |
58
  | n_extra_continuous_covs | 0 |
59
- | n_labels | 14 |
60
  | n_latent_qzm | 20 |
61
  | n_latent_qzv | 20 |
62
  | n_vars | 4000 |
@@ -85,14 +85,14 @@ to host on the huggingface Model hub.
85
  sure to provide this field if you want users to be able to access your training data. See the scvi-tools
86
  documentation for details. -->
87
 
88
- Training data url: https://zenodo.org/api/files/fd2c61e6-f4cd-4984-ade0-24d26d9adef6/TS_Salivary_Gland_filtered.h5ad
89
 
90
  # Training code
91
 
92
  This is an optional link to the code used to train the model.
93
 
94
- Training code url: https://github.com/scvi-hub-references/tabula_sapiens/main.py
95
 
96
  # References
97
 
98
- The Tabula Sapiens: A multi-organ, single-cell transcriptomic atlas of humans. The Tabula Sapiens Consortium. Science 2022.05.13; doi: https: //doi.org/10.1126/science.abl4896
 
6
  - genomics
7
  - single-cell
8
  - model_cls_name:SCVI
9
+ - scvi_version:1.1.0
10
+ - anndata_version:0.10.3
11
  - modality:rna
12
  - tissue:Salivary_Gland
13
  - annotated:True
 
15
 
16
  # Description
17
 
18
+ To be added...
19
 
20
  # Model properties
21
 
 
53
  | Summary Stat Key | Value |
54
  |--------------------------|-------|
55
  | n_batch | 4 |
56
+ | n_cells | 27199 |
57
  | n_extra_categorical_covs | 0 |
58
  | n_extra_continuous_covs | 0 |
59
+ | n_labels | 23 |
60
  | n_latent_qzm | 20 |
61
  | n_latent_qzv | 20 |
62
  | n_vars | 4000 |
 
85
  sure to provide this field if you want users to be able to access your training data. See the scvi-tools
86
  documentation for details. -->
87
 
88
+ Training data url: N/A
89
 
90
  # Training code
91
 
92
  This is an optional link to the code used to train the model.
93
 
94
+ Training code url: N/A
95
 
96
  # References
97
 
98
+ To be added...