martinkim0 commited on
Commit
cf5a308
1 Parent(s): 8bf8d9f

Upload README.md with huggingface_hub

Browse files
Files changed (1) hide show
  1. README.md +73 -0
README.md ADDED
@@ -0,0 +1,73 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ license: cc-by-4.0
3
+ library_name: scvi-tools
4
+ tags:
5
+ - biology
6
+ - genomics
7
+ - single-cell
8
+ - model_cls_name:RNAStereoscope
9
+ - scvi_version:0.20.0b1
10
+ - anndata_version:0.8.0
11
+ - modality:rna
12
+ - tissue:Uterus
13
+ - annotated:True
14
+ ---
15
+
16
+ # Description
17
+
18
+ Tabula sapiens. An across organ dataset of cell-types in human tissues.
19
+
20
+ # Model properties
21
+
22
+ Many model properties are in the model tags. Some more are listed below.
23
+
24
+ **model_init_params**:
25
+ ```json
26
+ {}
27
+ ```
28
+
29
+ **model_setup_anndata_args**:
30
+ ```json
31
+ {
32
+ "labels_key": "cell_ontology_class",
33
+ "layer": null
34
+ }
35
+ ```
36
+
37
+ **model_summary_stats**:
38
+ | Summary Stat Key | Value |
39
+ |------------------|-------|
40
+ | n_cells | 7114 |
41
+ | n_labels | 13 |
42
+ | n_vars | 4000 |
43
+
44
+ **model_data_registry**:
45
+ | Registry Key | scvi-tools Location |
46
+ |--------------|---------------------------|
47
+ | X | adata.X |
48
+ | labels | adata.obs['_scvi_labels'] |
49
+
50
+ **model_parent_module**: scvi.model
51
+
52
+ **data_is_minified**: False
53
+
54
+ # Training data
55
+
56
+ This is an optional link to where the training data is stored if it is too large
57
+ to host on the huggingface Model hub.
58
+
59
+ <!-- If your model is not uploaded with any data (e.g., minified data) on the Model Hub, then make
60
+ sure to provide this field if you want users to be able to access your training data. See the scvi-tools
61
+ documentation for details. -->
62
+
63
+ Training data url: https://zenodo.org/api/files/c676cd14-97a7-4ea6-ba70-2c7faa1d61d8/Uterus_training_data.h5ad
64
+
65
+ # Training code
66
+
67
+ This is an optional link to the code used to train the model.
68
+
69
+ Training code url: https://github.com/scvi-hub-references/tabula_sapiens/main.py
70
+
71
+ # References
72
+
73
+ The Tabula Sapiens: A multi-organ, single-cell transcriptomic atlas of humans. The Tabula Sapiens Consortium. Science 2022.05.13; doi: https: //doi.org/10.1126/science.abl4896