sofia-todeschini commited on
Commit
3f06a5c
1 Parent(s): 080878f

update model card README.md

Browse files
Files changed (1) hide show
  1. README.md +78 -0
README.md ADDED
@@ -0,0 +1,78 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ tags:
3
+ - generated_from_trainer
4
+ metrics:
5
+ - accuracy
6
+ model-index:
7
+ - name: BioELECTRA-LitCovid-v1.3h
8
+ results: []
9
+ ---
10
+
11
+ <!-- This model card has been generated automatically according to the information the Trainer had access to. You
12
+ should probably proofread and complete it, then remove this comment. -->
13
+
14
+ # BioELECTRA-LitCovid-v1.3h
15
+
16
+ This model is a fine-tuned version of [kamalkraj/bioelectra-base-discriminator-pubmed](https://huggingface.co/kamalkraj/bioelectra-base-discriminator-pubmed) on an unknown dataset.
17
+ It achieves the following results on the evaluation set:
18
+ - Loss: 0.7785
19
+ - Hamming loss: 0.0198
20
+ - F1 micro: 0.8361
21
+ - F1 macro: 0.3559
22
+ - F1 weighted: 0.8787
23
+ - F1 samples: 0.8727
24
+ - Precision micro: 0.7527
25
+ - Precision macro: 0.2860
26
+ - Precision weighted: 0.8332
27
+ - Precision samples: 0.8513
28
+ - Recall micro: 0.9403
29
+ - Recall macro: 0.7383
30
+ - Recall weighted: 0.9403
31
+ - Recall samples: 0.9483
32
+ - Roc Auc: 0.9614
33
+ - Accuracy: 0.6748
34
+
35
+ ## Model description
36
+
37
+ More information needed
38
+
39
+ ## Intended uses & limitations
40
+
41
+ More information needed
42
+
43
+ ## Training and evaluation data
44
+
45
+ More information needed
46
+
47
+ ## Training procedure
48
+
49
+ ### Training hyperparameters
50
+
51
+ The following hyperparameters were used during training:
52
+ - learning_rate: 5e-05
53
+ - train_batch_size: 16
54
+ - eval_batch_size: 16
55
+ - seed: 42
56
+ - optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
57
+ - lr_scheduler_type: linear
58
+ - lr_scheduler_warmup_ratio: 0.1866747178469669
59
+ - num_epochs: 5
60
+ - mixed_precision_training: Native AMP
61
+
62
+ ### Training results
63
+
64
+ | Training Loss | Epoch | Step | Validation Loss | Hamming loss | F1 micro | F1 macro | F1 weighted | F1 samples | Precision micro | Precision macro | Precision weighted | Precision samples | Recall micro | Recall macro | Recall weighted | Recall samples | Roc Auc | Accuracy |
65
+ |:-------------:|:-----:|:-----:|:---------------:|:------------:|:--------:|:--------:|:-----------:|:----------:|:---------------:|:---------------:|:------------------:|:-----------------:|:------------:|:------------:|:---------------:|:--------------:|:-------:|:--------:|
66
+ | 1.5951 | 1.0 | 2272 | 0.6305 | 0.0577 | 0.6142 | 0.2231 | 0.7544 | 0.7325 | 0.4787 | 0.1794 | 0.7016 | 0.6957 | 0.8568 | 0.7122 | 0.8568 | 0.8824 | 0.9020 | 0.3878 |
67
+ | 1.1968 | 2.0 | 4544 | 0.4865 | 0.0353 | 0.7393 | 0.2825 | 0.8470 | 0.8156 | 0.6122 | 0.2305 | 0.7890 | 0.7790 | 0.9330 | 0.7538 | 0.9330 | 0.9449 | 0.9497 | 0.5560 |
68
+ | 0.9573 | 3.0 | 6816 | 0.5637 | 0.0247 | 0.8033 | 0.3292 | 0.8474 | 0.8430 | 0.7019 | 0.2574 | 0.7851 | 0.8066 | 0.9389 | 0.7380 | 0.9389 | 0.9470 | 0.9582 | 0.5918 |
69
+ | 0.7604 | 4.0 | 9088 | 0.6811 | 0.0206 | 0.8306 | 0.3558 | 0.8726 | 0.8675 | 0.7441 | 0.2835 | 0.8239 | 0.8438 | 0.9400 | 0.7574 | 0.9400 | 0.9483 | 0.9608 | 0.6561 |
70
+ | 0.4404 | 5.0 | 11360 | 0.7785 | 0.0198 | 0.8361 | 0.3559 | 0.8787 | 0.8727 | 0.7527 | 0.2860 | 0.8332 | 0.8513 | 0.9403 | 0.7383 | 0.9403 | 0.9483 | 0.9614 | 0.6748 |
71
+
72
+
73
+ ### Framework versions
74
+
75
+ - Transformers 4.28.0
76
+ - Pytorch 2.1.0+cu121
77
+ - Datasets 2.18.0
78
+ - Tokenizers 0.13.3