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[[package]] | |
name = "altair" | |
version = "4.2.2" | |
description = "Altair: A declarative statistical visualization library for Python." | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
entrypoints = "*" | |
jinja2 = "*" | |
jsonschema = ">=3.0" | |
numpy = "*" | |
pandas = ">=0.18" | |
toolz = "*" | |
[package.extras] | |
dev = ["black", "docutils", "ipython", "flake8", "pytest", "sphinx", "mistune (<2.0.0)", "m2r", "vega-datasets", "recommonmark"] | |
[[package]] | |
name = "anyio" | |
version = "3.6.2" | |
description = "High level compatibility layer for multiple asynchronous event loop implementations" | |
category = "main" | |
optional = false | |
python-versions = ">=3.6.2" | |
[package.dependencies] | |
idna = ">=2.8" | |
sniffio = ">=1.1" | |
[package.extras] | |
doc = ["packaging", "sphinx-rtd-theme", "sphinx-autodoc-typehints (>=1.2.0)"] | |
test = ["coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "contextlib2", "uvloop (<0.15)", "mock (>=4)", "uvloop (>=0.15)"] | |
trio = ["trio (>=0.16,<0.22)"] | |
[[package]] | |
name = "appnope" | |
version = "0.1.3" | |
description = "Disable App Nap on macOS >= 10.9" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[[package]] | |
name = "argon2-cffi" | |
version = "21.3.0" | |
description = "The secure Argon2 password hashing algorithm." | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[package.dependencies] | |
argon2-cffi-bindings = "*" | |
[package.extras] | |
dev = ["pre-commit", "cogapp", "tomli", "coverage[toml] (>=5.0.2)", "hypothesis", "pytest", "sphinx", "sphinx-notfound-page", "furo"] | |
docs = ["sphinx", "sphinx-notfound-page", "furo"] | |
tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pytest"] | |
[[package]] | |
name = "argon2-cffi-bindings" | |
version = "21.2.0" | |
description = "Low-level CFFI bindings for Argon2" | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[package.dependencies] | |
cffi = ">=1.0.1" | |
[package.extras] | |
dev = ["pytest", "cogapp", "pre-commit", "wheel"] | |
tests = ["pytest"] | |
[[package]] | |
name = "arrow" | |
version = "1.2.3" | |
description = "Better dates & times for Python" | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[package.dependencies] | |
python-dateutil = ">=2.7.0" | |
[[package]] | |
name = "asttokens" | |
version = "2.2.1" | |
description = "Annotate AST trees with source code positions" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[package.dependencies] | |
six = "*" | |
[package.extras] | |
test = ["astroid", "pytest"] | |
[[package]] | |
name = "attrs" | |
version = "22.2.0" | |
description = "Classes Without Boilerplate" | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[package.extras] | |
cov = ["attrs", "coverage-enable-subprocess", "coverage[toml] (>=5.3)"] | |
dev = ["attrs"] | |
docs = ["furo", "sphinx", "myst-parser", "zope.interface", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier"] | |
tests = ["attrs", "zope.interface"] | |
tests-no-zope = ["hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist", "cloudpickle", "mypy (>=0.971,<0.990)", "pytest-mypy-plugins"] | |
tests_no_zope = ["hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist", "cloudpickle", "mypy (>=0.971,<0.990)", "pytest-mypy-plugins"] | |
[[package]] | |
name = "backcall" | |
version = "0.2.0" | |
description = "Specifications for callback functions passed in to an API" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[[package]] | |
name = "backports.zoneinfo" | |
version = "0.2.1" | |
description = "Backport of the standard library zoneinfo module" | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[package.extras] | |
tzdata = ["tzdata"] | |
[[package]] | |
name = "beautifulsoup4" | |
version = "4.11.2" | |
description = "Screen-scraping library" | |
category = "main" | |
optional = false | |
python-versions = ">=3.6.0" | |
[package.dependencies] | |
soupsieve = ">1.2" | |
[package.extras] | |
html5lib = ["html5lib"] | |
lxml = ["lxml"] | |
[[package]] | |
name = "biopython" | |
version = "1.81" | |
description = "Freely available tools for computational molecular biology." | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
numpy = "*" | |
[[package]] | |
name = "bleach" | |
version = "6.0.0" | |
description = "An easy safelist-based HTML-sanitizing tool." | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
six = ">=1.9.0" | |
webencodings = "*" | |
[package.extras] | |
css = ["tinycss2 (>=1.1.0,<1.2)"] | |
[[package]] | |
name = "blinker" | |
version = "1.5" | |
description = "Fast, simple object-to-object and broadcast signaling" | |
category = "main" | |
optional = false | |
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" | |
[[package]] | |
name = "boto3" | |
version = "1.26.95" | |
description = "The AWS SDK for Python" | |
category = "main" | |
optional = false | |
python-versions = ">= 3.7" | |
[package.dependencies] | |
botocore = ">=1.29.95,<1.30.0" | |
jmespath = ">=0.7.1,<2.0.0" | |
s3transfer = ">=0.6.0,<0.7.0" | |
[package.extras] | |
crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] | |
[[package]] | |
name = "botocore" | |
version = "1.29.95" | |
description = "Low-level, data-driven core of boto 3." | |
category = "main" | |
optional = false | |
python-versions = ">= 3.7" | |
[package.dependencies] | |
jmespath = ">=0.7.1,<2.0.0" | |
python-dateutil = ">=2.1,<3.0.0" | |
urllib3 = ">=1.25.4,<1.27" | |
[package.extras] | |
crt = ["awscrt (==0.16.9)"] | |
[[package]] | |
name = "cachetools" | |
version = "5.3.0" | |
description = "Extensible memoizing collections and decorators" | |
category = "main" | |
optional = false | |
python-versions = "~=3.7" | |
[[package]] | |
name = "certifi" | |
version = "2022.12.7" | |
description = "Python package for providing Mozilla's CA Bundle." | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[[package]] | |
name = "cffi" | |
version = "1.15.1" | |
description = "Foreign Function Interface for Python calling C code." | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[package.dependencies] | |
pycparser = "*" | |
[[package]] | |
name = "charset-normalizer" | |
version = "3.1.0" | |
description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." | |
category = "main" | |
optional = false | |
python-versions = ">=3.7.0" | |
[[package]] | |
name = "click" | |
version = "8.1.3" | |
description = "Composable command line interface toolkit" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
colorama = {version = "*", markers = "platform_system == \"Windows\""} | |
[[package]] | |
name = "cmake" | |
version = "3.26.0" | |
description = "CMake is an open-source, cross-platform family of tools designed to build, test and package software" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[package.extras] | |
test = ["codecov (>=2.0.5)", "coverage (>=4.2)", "flake8 (>=3.0.4)", "path.py (>=11.5.0)", "pytest (>=3.0.3)", "pytest-cov (>=2.4.0)", "pytest-runner (>=2.9)", "pytest-virtualenv (>=1.7.0)", "scikit-build (>=0.10.0)", "setuptools (>=28.0.0)", "virtualenv (>=15.0.3)", "wheel"] | |
[[package]] | |
name = "colorama" | |
version = "0.4.6" | |
description = "Cross-platform colored terminal text." | |
category = "main" | |
optional = false | |
python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" | |
[[package]] | |
name = "comm" | |
version = "0.1.2" | |
description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc." | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[package.dependencies] | |
traitlets = ">=5.3" | |
[package.extras] | |
test = ["pytest"] | |
[[package]] | |
name = "contourpy" | |
version = "1.0.7" | |
description = "Python library for calculating contours of 2D quadrilateral grids" | |
category = "main" | |
optional = false | |
python-versions = ">=3.8" | |
[package.dependencies] | |
numpy = ">=1.16" | |
[package.extras] | |
bokeh = ["bokeh", "chromedriver", "selenium"] | |
docs = ["furo", "sphinx-copybutton"] | |
mypy = ["contourpy", "docutils-stubs", "mypy (==0.991)", "types-pillow"] | |
test = ["matplotlib", "pillow", "pytest"] | |
test-no-images = ["pytest"] | |
[[package]] | |
name = "cycler" | |
version = "0.11.0" | |
description = "Composable style cycles" | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[[package]] | |
name = "debugpy" | |
version = "1.6.6" | |
description = "An implementation of the Debug Adapter Protocol for Python" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[[package]] | |
name = "decorator" | |
version = "5.1.1" | |
description = "Decorators for Humans" | |
category = "main" | |
optional = false | |
python-versions = ">=3.5" | |
[[package]] | |
name = "defusedxml" | |
version = "0.7.1" | |
description = "XML bomb protection for Python stdlib modules" | |
category = "main" | |
optional = false | |
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" | |
[[package]] | |
name = "deprecation" | |
version = "2.1.0" | |
description = "A library to handle automated deprecations" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[package.dependencies] | |
packaging = "*" | |
[[package]] | |
name = "entrypoints" | |
version = "0.4" | |
description = "Discover and load entry points from installed packages." | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[[package]] | |
name = "exceptiongroup" | |
version = "1.1.1" | |
description = "Backport of PEP 654 (exception groups)" | |
category = "dev" | |
optional = false | |
python-versions = ">=3.7" | |
[package.extras] | |
test = ["pytest (>=6)"] | |
[[package]] | |
name = "executing" | |
version = "1.2.0" | |
description = "Get the currently executing AST node of a frame, and other information" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[package.extras] | |
tests = ["asttokens", "pytest", "littleutils", "rich"] | |
[[package]] | |
name = "fastjsonschema" | |
version = "2.16.3" | |
description = "Fastest Python implementation of JSON schema" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[package.extras] | |
devel = ["colorama", "jsonschema", "json-spec", "pylint", "pytest", "pytest-benchmark", "pytest-cache", "validictory"] | |
[[package]] | |
name = "filelock" | |
version = "3.10.0" | |
description = "A platform independent file lock." | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.extras] | |
docs = ["furo (>=2022.12.7)", "sphinx-autodoc-typehints (>=1.22,!=1.23.4)", "sphinx (>=6.1.3)"] | |
testing = ["covdefaults (>=2.3)", "coverage (>=7.2.1)", "pytest-cov (>=4)", "pytest-timeout (>=2.1)", "pytest (>=7.2.2)"] | |
[[package]] | |
name = "fonttools" | |
version = "4.39.3" | |
description = "Tools to manipulate font files" | |
category = "main" | |
optional = false | |
python-versions = ">=3.8" | |
[package.extras] | |
all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "uharfbuzz (>=0.23.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=15.0.0)", "xattr"] | |
graphite = ["lz4 (>=1.7.4.2)"] | |
interpolatable = ["scipy", "munkres"] | |
lxml = ["lxml (>=4.0,<5)"] | |
pathops = ["skia-pathops (>=0.5.0)"] | |
plot = ["matplotlib"] | |
repacker = ["uharfbuzz (>=0.23.0)"] | |
symfont = ["sympy"] | |
type1 = ["xattr"] | |
ufo = ["fs (>=2.2.0,<3)"] | |
unicode = ["unicodedata2 (>=15.0.0)"] | |
woff = ["zopfli (>=0.1.4)", "brotlicffi (>=0.8.0)", "brotli (>=1.0.1)"] | |
[[package]] | |
name = "fqdn" | |
version = "1.5.1" | |
description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers" | |
category = "main" | |
optional = false | |
python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4" | |
[[package]] | |
name = "gitdb" | |
version = "4.0.10" | |
description = "Git Object Database" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
smmap = ">=3.0.1,<6" | |
[[package]] | |
name = "gitpython" | |
version = "3.1.31" | |
description = "GitPython is a Python library used to interact with Git repositories" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
gitdb = ">=4.0.1,<5" | |
[[package]] | |
name = "huggingface-hub" | |
version = "0.13.2" | |
description = "Client library to download and publish models, datasets and other repos on the huggingface.co hub" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7.0" | |
[package.dependencies] | |
filelock = "*" | |
packaging = ">=20.9" | |
pyyaml = ">=5.1" | |
requests = "*" | |
tqdm = ">=4.42.1" | |
typing-extensions = ">=3.7.4.3" | |
[package.extras] | |
all = ["InquirerPy (==0.3.4)", "jedi", "jinja2", "pytest", "pytest-cov", "pytest-env", "pytest-xdist", "soundfile", "pillow", "black (>=23.1,<24.0)", "ruff (>=0.0.241)", "mypy (==0.982)", "types-pyyaml", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3"] | |
cli = ["InquirerPy (==0.3.4)"] | |
dev = ["InquirerPy (==0.3.4)", "jedi", "jinja2", "pytest", "pytest-cov", "pytest-env", "pytest-xdist", "soundfile", "pillow", "black (>=23.1,<24.0)", "ruff (>=0.0.241)", "mypy (==0.982)", "types-pyyaml", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3"] | |
fastai = ["toml", "fastai (>=2.4)", "fastcore (>=1.3.27)"] | |
quality = ["black (>=23.1,<24.0)", "ruff (>=0.0.241)", "mypy (==0.982)"] | |
tensorflow = ["tensorflow", "pydot", "graphviz"] | |
testing = ["InquirerPy (==0.3.4)", "jedi", "jinja2", "pytest", "pytest-cov", "pytest-env", "pytest-xdist", "soundfile", "pillow"] | |
torch = ["torch"] | |
typing = ["types-pyyaml", "types-requests", "types-simplejson", "types-toml", "types-tqdm", "types-urllib3"] | |
[[package]] | |
name = "idna" | |
version = "3.4" | |
description = "Internationalized Domain Names in Applications (IDNA)" | |
category = "main" | |
optional = false | |
python-versions = ">=3.5" | |
[[package]] | |
name = "importlib-metadata" | |
version = "6.0.0" | |
description = "Read metadata from Python packages" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
zipp = ">=0.5" | |
[package.extras] | |
docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"] | |
perf = ["ipython"] | |
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "pytest-flake8", "importlib-resources (>=1.3)"] | |
[[package]] | |
name = "importlib-resources" | |
version = "5.12.0" | |
description = "Read resources from Python packages" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} | |
[package.extras] | |
docs = ["sphinx (>=3.5)", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "furo", "sphinx-lint", "jaraco.tidelift (>=1.4)"] | |
testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "flake8 (<5)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "pytest-flake8"] | |
[[package]] | |
name = "iniconfig" | |
version = "2.0.0" | |
description = "brain-dead simple config-ini parsing" | |
category = "dev" | |
optional = false | |
python-versions = ">=3.7" | |
[[package]] | |
name = "ipykernel" | |
version = "6.21.3" | |
description = "IPython Kernel for Jupyter" | |
category = "main" | |
optional = false | |
python-versions = ">=3.8" | |
[package.dependencies] | |
appnope = {version = "*", markers = "platform_system == \"Darwin\""} | |
comm = ">=0.1.1" | |
debugpy = ">=1.6.5" | |
ipython = ">=7.23.1" | |
jupyter-client = ">=6.1.12" | |
jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" | |
matplotlib-inline = ">=0.1" | |
nest-asyncio = "*" | |
packaging = "*" | |
psutil = "*" | |
pyzmq = ">=20" | |
tornado = ">=6.1" | |
traitlets = ">=5.4.0" | |
[package.extras] | |
cov = ["coverage", "curio", "matplotlib", "pytest-cov", "trio"] | |
docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-spelling", "trio"] | |
pyqt5 = ["pyqt5"] | |
pyside6 = ["pyside6"] | |
test = ["flaky", "ipyparallel", "pre-commit", "pytest-asyncio", "pytest-cov", "pytest-timeout", "pytest (>=7.0)"] | |
[[package]] | |
name = "ipyspeck" | |
version = "0.6.1" | |
description = "Speck Jupyter Widget" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[package.dependencies] | |
ipywidgets = ">=7.0.0" | |
jupyter-packaging = ">=0.3.0" | |
[[package]] | |
name = "ipython" | |
version = "8.11.0" | |
description = "IPython: Productive Interactive Computing" | |
category = "main" | |
optional = false | |
python-versions = ">=3.8" | |
[package.dependencies] | |
appnope = {version = "*", markers = "sys_platform == \"darwin\""} | |
backcall = "*" | |
colorama = {version = "*", markers = "sys_platform == \"win32\""} | |
decorator = "*" | |
jedi = ">=0.16" | |
matplotlib-inline = "*" | |
pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""} | |
pickleshare = "*" | |
prompt-toolkit = ">=3.0.30,<3.0.37 || >3.0.37,<3.1.0" | |
pygments = ">=2.4.0" | |
stack-data = "*" | |
traitlets = ">=5" | |
[package.extras] | |
all = ["black", "ipykernel", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "docrepr", "matplotlib", "stack-data", "pytest (<7)", "typing-extensions", "pytest (<7.1)", "pytest-asyncio", "testpath", "nbconvert", "nbformat", "ipywidgets", "notebook", "ipyparallel", "qtconsole", "curio", "matplotlib (!=3.2.0)", "numpy (>=1.21)", "pandas", "trio"] | |
black = ["black"] | |
doc = ["ipykernel", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "docrepr", "matplotlib", "stack-data", "pytest (<7)", "typing-extensions", "pytest (<7.1)", "pytest-asyncio", "testpath"] | |
kernel = ["ipykernel"] | |
nbconvert = ["nbconvert"] | |
nbformat = ["nbformat"] | |
notebook = ["ipywidgets", "notebook"] | |
parallel = ["ipyparallel"] | |
qtconsole = ["qtconsole"] | |
test = ["pytest (<7.1)", "pytest-asyncio", "testpath"] | |
test_extra = ["pytest (<7.1)", "pytest-asyncio", "testpath", "curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.21)", "pandas", "trio"] | |
[[package]] | |
name = "ipython-genutils" | |
version = "0.2.0" | |
description = "Vestigial utilities from IPython" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[[package]] | |
name = "ipywidgets" | |
version = "7.6.3" | |
description = "IPython HTML widgets for Jupyter" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[package.dependencies] | |
ipykernel = ">=4.5.1" | |
ipython = {version = ">=4.0.0", markers = "python_version >= \"3.3\""} | |
jupyterlab-widgets = {version = ">=1.0.0", markers = "python_version >= \"3.6\""} | |
nbformat = ">=4.2.0" | |
traitlets = ">=4.3.1" | |
widgetsnbextension = ">=3.5.0,<3.6.0" | |
[package.extras] | |
test = ["pytest (>=3.6.0)", "pytest-cov", "mock"] | |
[[package]] | |
name = "isoduration" | |
version = "20.11.0" | |
description = "Operations with ISO 8601 durations" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
arrow = ">=0.15.0" | |
[[package]] | |
name = "jedi" | |
version = "0.18.2" | |
description = "An autocompletion tool for Python that can be used for text editors." | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[package.dependencies] | |
parso = ">=0.8.0,<0.9.0" | |
[package.extras] | |
docs = ["Jinja2 (==2.11.3)", "MarkupSafe (==1.1.1)", "Pygments (==2.8.1)", "alabaster (==0.7.12)", "babel (==2.9.1)", "chardet (==4.0.0)", "commonmark (==0.8.1)", "docutils (==0.17.1)", "future (==0.18.2)", "idna (==2.10)", "imagesize (==1.2.0)", "mock (==1.0.1)", "packaging (==20.9)", "pyparsing (==2.4.7)", "pytz (==2021.1)", "readthedocs-sphinx-ext (==2.1.4)", "recommonmark (==0.5.0)", "requests (==2.25.1)", "six (==1.15.0)", "snowballstemmer (==2.1.0)", "sphinx-rtd-theme (==0.4.3)", "sphinx (==1.8.5)", "sphinxcontrib-serializinghtml (==1.1.4)", "sphinxcontrib-websupport (==1.2.4)", "urllib3 (==1.26.4)"] | |
qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] | |
testing = ["Django (<3.1)", "attrs", "colorama", "docopt", "pytest (<7.0.0)"] | |
[[package]] | |
name = "jinja2" | |
version = "3.1.2" | |
description = "A very fast and expressive template engine." | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
MarkupSafe = ">=2.0" | |
[package.extras] | |
i18n = ["Babel (>=2.7)"] | |
[[package]] | |
name = "jmespath" | |
version = "1.0.1" | |
description = "JSON Matching Expressions" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[[package]] | |
name = "jsonpointer" | |
version = "2.3" | |
description = "Identify specific nodes in a JSON document (RFC 6901)" | |
category = "main" | |
optional = false | |
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" | |
[[package]] | |
name = "jsonschema" | |
version = "4.17.3" | |
description = "An implementation of JSON Schema validation for Python" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
attrs = ">=17.4.0" | |
fqdn = {version = "*", optional = true, markers = "extra == \"format-nongpl\""} | |
idna = {version = "*", optional = true, markers = "extra == \"format-nongpl\""} | |
importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""} | |
isoduration = {version = "*", optional = true, markers = "extra == \"format-nongpl\""} | |
jsonpointer = {version = ">1.13", optional = true, markers = "extra == \"format-nongpl\""} | |
pkgutil-resolve-name = {version = ">=1.3.10", markers = "python_version < \"3.9\""} | |
pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2" | |
rfc3339-validator = {version = "*", optional = true, markers = "extra == \"format-nongpl\""} | |
rfc3986-validator = {version = ">0.1.0", optional = true, markers = "extra == \"format-nongpl\""} | |
uri-template = {version = "*", optional = true, markers = "extra == \"format-nongpl\""} | |
webcolors = {version = ">=1.11", optional = true, markers = "extra == \"format-nongpl\""} | |
[package.extras] | |
format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"] | |
format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"] | |
[[package]] | |
name = "jupyter-client" | |
version = "8.0.3" | |
description = "Jupyter protocol implementation and client libraries" | |
category = "main" | |
optional = false | |
python-versions = ">=3.8" | |
[package.dependencies] | |
importlib-metadata = {version = ">=4.8.3", markers = "python_version < \"3.10\""} | |
jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" | |
python-dateutil = ">=2.8.2" | |
pyzmq = ">=23.0" | |
tornado = ">=6.2" | |
traitlets = ">=5.3" | |
[package.extras] | |
docs = ["ipykernel", "myst-parser", "pydata-sphinx-theme", "sphinx-autodoc-typehints", "sphinx (>=4)", "sphinxcontrib-github-alt", "sphinxcontrib-spelling"] | |
test = ["codecov", "coverage", "ipykernel (>=6.14)", "mypy", "paramiko", "pre-commit", "pytest", "pytest-cov", "pytest-jupyter[client] (>=0.4.1)", "pytest-timeout"] | |
[[package]] | |
name = "jupyter-core" | |
version = "5.2.0" | |
description = "Jupyter core package. A base package on which Jupyter projects rely." | |
category = "main" | |
optional = false | |
python-versions = ">=3.8" | |
[package.dependencies] | |
platformdirs = ">=2.5" | |
pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""} | |
traitlets = ">=5.3" | |
[package.extras] | |
docs = ["myst-parser", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-spelling", "traitlets"] | |
test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"] | |
[[package]] | |
name = "jupyter-events" | |
version = "0.6.3" | |
description = "Jupyter Event System library" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
jsonschema = {version = ">=3.2.0", extras = ["format-nongpl"]} | |
python-json-logger = ">=2.0.4" | |
pyyaml = ">=5.3" | |
rfc3339-validator = "*" | |
rfc3986-validator = ">=0.1.1" | |
traitlets = ">=5.3" | |
[package.extras] | |
cli = ["click", "rich"] | |
docs = ["jupyterlite-sphinx", "myst-parser", "pydata-sphinx-theme", "sphinxcontrib-spelling"] | |
test = ["click", "coverage", "pre-commit", "pytest-asyncio (>=0.19.0)", "pytest-console-scripts", "pytest-cov", "pytest (>=7.0)", "rich"] | |
[[package]] | |
name = "jupyter-packaging" | |
version = "0.12.3" | |
description = "Jupyter Packaging Utilities." | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
deprecation = "*" | |
packaging = "*" | |
tomlkit = "*" | |
[package.extras] | |
test = ["build", "coverage", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytest-timeout"] | |
[[package]] | |
name = "jupyter-server" | |
version = "2.4.0" | |
description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications." | |
category = "main" | |
optional = false | |
python-versions = ">=3.8" | |
[package.dependencies] | |
anyio = ">=3.1.0" | |
argon2-cffi = "*" | |
jinja2 = "*" | |
jupyter-client = ">=7.4.4" | |
jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" | |
jupyter-events = ">=0.4.0" | |
jupyter-server-terminals = "*" | |
nbconvert = ">=6.4.4" | |
nbformat = ">=5.3.0" | |
packaging = "*" | |
prometheus-client = "*" | |
pywinpty = {version = "*", markers = "os_name == \"nt\""} | |
pyzmq = ">=24" | |
send2trash = "*" | |
terminado = ">=0.8.3" | |
tornado = ">=6.2.0" | |
traitlets = ">=5.6.0" | |
websocket-client = "*" | |
[package.extras] | |
docs = ["docutils (<0.20)", "ipykernel", "jinja2", "jupyter-client", "jupyter-server", "mistune (<1.0.0)", "myst-parser", "nbformat", "prometheus-client", "pydata-sphinx-theme", "send2trash", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-openapi", "sphinxcontrib-spelling", "sphinxemoji", "tornado", "typing-extensions"] | |
test = ["ipykernel", "pre-commit", "pytest-console-scripts", "pytest-jupyter[server] (>=0.4)", "pytest-timeout", "pytest (>=7.0)", "requests"] | |
[[package]] | |
name = "jupyter-server-terminals" | |
version = "0.4.4" | |
description = "A Jupyter Server Extension Providing Terminals." | |
category = "main" | |
optional = false | |
python-versions = ">=3.8" | |
[package.dependencies] | |
pywinpty = {version = ">=2.0.3", markers = "os_name == \"nt\""} | |
terminado = ">=0.8.3" | |
[package.extras] | |
docs = ["jinja2", "jupyter-server", "mistune (<3.0)", "myst-parser", "nbformat", "packaging", "pydata-sphinx-theme", "sphinxcontrib-github-alt", "sphinxcontrib-openapi", "sphinxcontrib-spelling", "sphinxemoji", "tornado"] | |
test = ["coverage", "jupyter-server (>=2.0.0)", "pytest-cov", "pytest-jupyter[server] (>=0.5.3)", "pytest-timeout", "pytest (>=7.0)"] | |
[[package]] | |
name = "jupyterlab-pygments" | |
version = "0.2.2" | |
description = "Pygments theme using JupyterLab CSS variables" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[[package]] | |
name = "jupyterlab-widgets" | |
version = "3.0.5" | |
description = "Jupyter interactive widgets for JupyterLab" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[[package]] | |
name = "kiwisolver" | |
version = "1.4.4" | |
description = "A fast implementation of the Cassowary constraint solver" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[[package]] | |
name = "lit" | |
version = "15.0.7" | |
description = "A Software Testing Tool" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[[package]] | |
name = "lmdb" | |
version = "1.4.0" | |
description = "Universal Python binding for the LMDB 'Lightning' Database" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[[package]] | |
name = "markdown-it-py" | |
version = "2.2.0" | |
description = "Python port of markdown-it. Markdown parsing, done right!" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
mdurl = ">=0.1,<1.0" | |
[package.extras] | |
benchmarking = ["psutil", "pytest", "pytest-benchmark"] | |
code_style = ["pre-commit (>=3.0,<4.0)"] | |
compare = ["commonmark (>=0.9,<1.0)", "markdown (>=3.4,<4.0)", "mistletoe (>=1.0,<2.0)", "mistune (>=2.0,<3.0)", "panflute (>=2.3,<3.0)"] | |
linkify = ["linkify-it-py (>=1,<3)"] | |
plugins = ["mdit-py-plugins"] | |
profiling = ["gprof2dot"] | |
rtd = ["attrs", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx-book-theme"] | |
testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"] | |
[[package]] | |
name = "markupsafe" | |
version = "2.1.2" | |
description = "Safely add untrusted strings to HTML/XML markup." | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[[package]] | |
name = "matplotlib" | |
version = "3.7.1" | |
description = "Python plotting package" | |
category = "main" | |
optional = false | |
python-versions = ">=3.8" | |
[package.dependencies] | |
contourpy = ">=1.0.1" | |
cycler = ">=0.10" | |
fonttools = ">=4.22.0" | |
importlib-resources = {version = ">=3.2.0", markers = "python_version < \"3.10\""} | |
kiwisolver = ">=1.0.1" | |
numpy = ">=1.20" | |
packaging = ">=20.0" | |
pillow = ">=6.2.0" | |
pyparsing = ">=2.3.1" | |
python-dateutil = ">=2.7" | |
setuptools_scm = ">=7" | |
[[package]] | |
name = "matplotlib-inline" | |
version = "0.1.6" | |
description = "Inline Matplotlib backend for Jupyter" | |
category = "main" | |
optional = false | |
python-versions = ">=3.5" | |
[package.dependencies] | |
traitlets = "*" | |
[[package]] | |
name = "mdurl" | |
version = "0.1.2" | |
description = "Markdown URL utilities" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[[package]] | |
name = "mistune" | |
version = "2.0.5" | |
description = "A sane Markdown parser with useful plugins and renderers" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[[package]] | |
name = "mpmath" | |
version = "1.3.0" | |
description = "Python library for arbitrary-precision floating-point arithmetic" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[package.extras] | |
develop = ["pytest (>=4.6)", "pycodestyle", "pytest-cov", "codecov", "wheel"] | |
docs = ["sphinx"] | |
gmpy = ["gmpy2 (>=2.1.0a4)"] | |
tests = ["pytest (>=4.6)"] | |
[[package]] | |
name = "nbclassic" | |
version = "0.5.3" | |
description = "Jupyter Notebook as a Jupyter Server extension." | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
argon2-cffi = "*" | |
ipykernel = "*" | |
ipython-genutils = "*" | |
jinja2 = "*" | |
jupyter-client = ">=6.1.1" | |
jupyter-core = ">=4.6.1" | |
jupyter-server = ">=1.8" | |
nbconvert = ">=5" | |
nbformat = "*" | |
nest-asyncio = ">=1.5" | |
notebook-shim = ">=0.1.0" | |
prometheus-client = "*" | |
pyzmq = ">=17" | |
Send2Trash = ">=1.8.0" | |
terminado = ">=0.8.3" | |
tornado = ">=6.1" | |
traitlets = ">=4.2.1" | |
[package.extras] | |
docs = ["sphinx", "nbsphinx", "sphinxcontrib-github-alt", "sphinx-rtd-theme", "myst-parser"] | |
json-logging = ["json-logging"] | |
test = ["pytest", "coverage", "requests", "testpath", "nbval", "pytest-playwright", "pytest-cov", "pytest-jupyter", "pytest-tornasync", "requests-unixsocket"] | |
[[package]] | |
name = "nbclient" | |
version = "0.7.2" | |
description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." | |
category = "main" | |
optional = false | |
python-versions = ">=3.7.0" | |
[package.dependencies] | |
jupyter-client = ">=6.1.12" | |
jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" | |
nbformat = ">=5.1" | |
traitlets = ">=5.3" | |
[package.extras] | |
dev = ["pre-commit"] | |
docs = ["autodoc-traits", "mock", "moto", "myst-parser", "nbclient", "sphinx-book-theme", "sphinx (>=1.7)"] | |
test = ["ipykernel", "ipython", "ipywidgets", "nbconvert (>=7.0.0)", "pytest-asyncio", "pytest-cov (>=4.0)", "pytest (>=7.0)", "testpath", "xmltodict"] | |
[[package]] | |
name = "nbconvert" | |
version = "7.2.10" | |
description = "Converting Jupyter Notebooks" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
beautifulsoup4 = "*" | |
bleach = "*" | |
defusedxml = "*" | |
importlib-metadata = {version = ">=3.6", markers = "python_version < \"3.10\""} | |
jinja2 = ">=3.0" | |
jupyter-core = ">=4.7" | |
jupyterlab-pygments = "*" | |
markupsafe = ">=2.0" | |
mistune = ">=2.0.3,<3" | |
nbclient = ">=0.5.0" | |
nbformat = ">=5.1" | |
packaging = "*" | |
pandocfilters = ">=1.4.1" | |
pygments = ">=2.4.1" | |
tinycss2 = "*" | |
traitlets = ">=5.0" | |
[package.extras] | |
all = ["nbconvert"] | |
docs = ["ipykernel", "ipython", "myst-parser", "nbsphinx (>=0.2.12)", "pydata-sphinx-theme", "sphinx (==5.0.2)", "sphinxcontrib-spelling"] | |
qtpdf = ["nbconvert"] | |
qtpng = ["pyqtwebengine (>=5.15)"] | |
serve = ["tornado (>=6.1)"] | |
test = ["ipykernel", "ipywidgets (>=7)", "pre-commit", "pytest", "pytest-dependency"] | |
webpdf = ["pyppeteer (>=1,<1.1)"] | |
[[package]] | |
name = "nbformat" | |
version = "5.7.3" | |
description = "The Jupyter Notebook format" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
fastjsonschema = "*" | |
jsonschema = ">=2.6" | |
jupyter-core = "*" | |
traitlets = ">=5.1" | |
[package.extras] | |
docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinxcontrib-github-alt", "sphinxcontrib-spelling"] | |
test = ["pep440", "pre-commit", "pytest", "testpath"] | |
[[package]] | |
name = "nest-asyncio" | |
version = "1.5.6" | |
description = "Patch asyncio to allow nested event loops" | |
category = "main" | |
optional = false | |
python-versions = ">=3.5" | |
[[package]] | |
name = "networkx" | |
version = "3.0" | |
description = "Python package for creating and manipulating graphs and networks" | |
category = "main" | |
optional = false | |
python-versions = ">=3.8" | |
[package.extras] | |
default = ["numpy (>=1.20)", "scipy (>=1.8)", "matplotlib (>=3.4)", "pandas (>=1.3)"] | |
developer = ["pre-commit (>=2.20)", "mypy (>=0.991)"] | |
doc = ["sphinx (==5.2.3)", "pydata-sphinx-theme (>=0.11)", "sphinx-gallery (>=0.11)", "numpydoc (>=1.5)", "pillow (>=9.2)", "nb2plots (>=0.6)", "texext (>=0.6.7)"] | |
extra = ["lxml (>=4.6)", "pygraphviz (>=1.10)", "pydot (>=1.4.2)", "sympy (>=1.10)"] | |
test = ["pytest (>=7.2)", "pytest-cov (>=4.0)", "codecov (>=2.1)"] | |
[[package]] | |
name = "notebook" | |
version = "6.5.3" | |
description = "A web-based notebook environment for interactive computing" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
argon2-cffi = "*" | |
ipykernel = "*" | |
ipython-genutils = "*" | |
jinja2 = "*" | |
jupyter-client = ">=5.3.4" | |
jupyter-core = ">=4.6.1" | |
nbclassic = ">=0.4.7" | |
nbconvert = ">=5" | |
nbformat = "*" | |
nest-asyncio = ">=1.5" | |
prometheus-client = "*" | |
pyzmq = ">=17" | |
Send2Trash = ">=1.8.0" | |
terminado = ">=0.8.3" | |
tornado = ">=6.1" | |
traitlets = ">=4.2.1" | |
[package.extras] | |
docs = ["sphinx", "nbsphinx", "sphinxcontrib-github-alt", "sphinx-rtd-theme", "myst-parser"] | |
json-logging = ["json-logging"] | |
test = ["pytest", "coverage", "requests", "testpath", "nbval", "selenium (==4.1.5)", "pytest-cov", "requests-unixsocket"] | |
[[package]] | |
name = "notebook-shim" | |
version = "0.2.2" | |
description = "A shim layer for notebook traits and config" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
jupyter-server = ">=1.8,<3" | |
[package.extras] | |
test = ["pytest", "pytest-console-scripts", "pytest-tornasync"] | |
[[package]] | |
name = "numpy" | |
version = "1.24.2" | |
description = "Fundamental package for array computing in Python" | |
category = "main" | |
optional = false | |
python-versions = ">=3.8" | |
[[package]] | |
name = "nvidia-cublas-cu11" | |
version = "11.10.3.66" | |
description = "CUBLAS native runtime libraries" | |
category = "main" | |
optional = false | |
python-versions = ">=3" | |
[[package]] | |
name = "nvidia-cuda-cupti-cu11" | |
version = "11.7.101" | |
description = "CUDA profiling tools runtime libs." | |
category = "main" | |
optional = false | |
python-versions = ">=3" | |
[[package]] | |
name = "nvidia-cuda-nvrtc-cu11" | |
version = "11.7.99" | |
description = "NVRTC native runtime libraries" | |
category = "main" | |
optional = false | |
python-versions = ">=3" | |
[[package]] | |
name = "nvidia-cuda-runtime-cu11" | |
version = "11.7.99" | |
description = "CUDA Runtime native Libraries" | |
category = "main" | |
optional = false | |
python-versions = ">=3" | |
[[package]] | |
name = "nvidia-cudnn-cu11" | |
version = "8.5.0.96" | |
description = "cuDNN runtime libraries" | |
category = "main" | |
optional = false | |
python-versions = ">=3" | |
[[package]] | |
name = "nvidia-cufft-cu11" | |
version = "10.9.0.58" | |
description = "CUFFT native runtime libraries" | |
category = "main" | |
optional = false | |
python-versions = ">=3" | |
[[package]] | |
name = "nvidia-curand-cu11" | |
version = "10.2.10.91" | |
description = "CURAND native runtime libraries" | |
category = "main" | |
optional = false | |
python-versions = ">=3" | |
[[package]] | |
name = "nvidia-cusolver-cu11" | |
version = "11.4.0.1" | |
description = "CUDA solver native runtime libraries" | |
category = "main" | |
optional = false | |
python-versions = ">=3" | |
[[package]] | |
name = "nvidia-cusparse-cu11" | |
version = "11.7.4.91" | |
description = "CUSPARSE native runtime libraries" | |
category = "main" | |
optional = false | |
python-versions = ">=3" | |
[[package]] | |
name = "nvidia-nccl-cu11" | |
version = "2.14.3" | |
description = "NVIDIA Collective Communication Library (NCCL) Runtime" | |
category = "main" | |
optional = false | |
python-versions = ">=3" | |
[[package]] | |
name = "nvidia-nvtx-cu11" | |
version = "11.7.91" | |
description = "NVIDIA Tools Extension" | |
category = "main" | |
optional = false | |
python-versions = ">=3" | |
[[package]] | |
name = "packaging" | |
version = "23.0" | |
description = "Core utilities for Python packages" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[[package]] | |
name = "pandas" | |
version = "1.5.3" | |
description = "Powerful data structures for data analysis, time series, and statistics" | |
category = "main" | |
optional = false | |
python-versions = ">=3.8" | |
[package.dependencies] | |
numpy = [ | |
{version = ">=1.20.3", markers = "python_version < \"3.10\""}, | |
{version = ">=1.21.0", markers = "python_version >= \"3.10\""}, | |
{version = ">=1.23.2", markers = "python_version >= \"3.11\""}, | |
] | |
python-dateutil = ">=2.8.1" | |
pytz = ">=2020.1" | |
[package.extras] | |
test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"] | |
[[package]] | |
name = "pandocfilters" | |
version = "1.5.0" | |
description = "Utilities for writing pandoc filters in python" | |
category = "main" | |
optional = false | |
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" | |
[[package]] | |
name = "parso" | |
version = "0.8.3" | |
description = "A Python Parser" | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[package.extras] | |
qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] | |
testing = ["docopt", "pytest (<6.0.0)"] | |
[[package]] | |
name = "pexpect" | |
version = "4.8.0" | |
description = "Pexpect allows easy control of interactive console applications." | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[package.dependencies] | |
ptyprocess = ">=0.5" | |
[[package]] | |
name = "pickleshare" | |
version = "0.7.5" | |
description = "Tiny 'shelve'-like database with concurrency support" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[[package]] | |
name = "pillow" | |
version = "9.4.0" | |
description = "Python Imaging Library (Fork)" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.extras] | |
docs = ["furo", "olefile", "sphinx (>=2.4)", "sphinx-copybutton", "sphinx-inline-tabs", "sphinx-issues (>=3.0.1)", "sphinx-removed-in", "sphinxext-opengraph"] | |
tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "packaging", "pyroma", "pytest", "pytest-cov", "pytest-timeout"] | |
[[package]] | |
name = "pkgutil-resolve-name" | |
version = "1.3.10" | |
description = "Resolve a name to an object." | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[[package]] | |
name = "platformdirs" | |
version = "3.1.1" | |
description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.extras] | |
docs = ["furo (>=2022.12.7)", "proselint (>=0.13)", "sphinx-autodoc-typehints (>=1.22,!=1.23.4)", "sphinx (>=6.1.3)"] | |
test = ["appdirs (==1.4.4)", "covdefaults (>=2.2.2)", "pytest-cov (>=4)", "pytest-mock (>=3.10)", "pytest (>=7.2.1)"] | |
[[package]] | |
name = "pluggy" | |
version = "1.0.0" | |
description = "plugin and hook calling mechanisms for python" | |
category = "dev" | |
optional = false | |
python-versions = ">=3.6" | |
[package.extras] | |
dev = ["pre-commit", "tox"] | |
testing = ["pytest", "pytest-benchmark"] | |
[[package]] | |
name = "prometheus-client" | |
version = "0.16.0" | |
description = "Python client for the Prometheus monitoring system." | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[package.extras] | |
twisted = ["twisted"] | |
[[package]] | |
name = "prompt-toolkit" | |
version = "3.0.38" | |
description = "Library for building powerful interactive command lines in Python" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7.0" | |
[package.dependencies] | |
wcwidth = "*" | |
[[package]] | |
name = "protobuf" | |
version = "3.20.3" | |
description = "Protocol Buffers" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[[package]] | |
name = "psutil" | |
version = "5.9.4" | |
description = "Cross-platform lib for process and system monitoring in Python." | |
category = "main" | |
optional = false | |
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" | |
[package.extras] | |
test = ["ipaddress", "mock", "enum34", "pywin32", "wmi"] | |
[[package]] | |
name = "ptyprocess" | |
version = "0.7.0" | |
description = "Run a subprocess in a pseudo terminal" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[[package]] | |
name = "pure-eval" | |
version = "0.2.2" | |
description = "Safely evaluate AST nodes without side effects" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[package.extras] | |
tests = ["pytest"] | |
[[package]] | |
name = "py3dmol" | |
version = "2.0.1.post1" | |
description = "An IPython interface for embedding 3Dmol.js views in Jupyter notebooks" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[package.extras] | |
ipython = ["ipython"] | |
[[package]] | |
name = "pyarrow" | |
version = "11.0.0" | |
description = "Python library for Apache Arrow" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
numpy = ">=1.16.6" | |
[[package]] | |
name = "pycparser" | |
version = "2.21" | |
description = "C parser in Python" | |
category = "main" | |
optional = false | |
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" | |
[[package]] | |
name = "pydeck" | |
version = "0.8.0" | |
description = "Widget for deck.gl maps" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
jinja2 = ">=2.10.1" | |
numpy = ">=1.16.4" | |
[package.extras] | |
carto = ["pydeck-carto"] | |
jupyter = ["ipywidgets (>=7,<8)", "traitlets (>=4.3.2)", "ipython (>=5.8.0)", "ipykernel (>=5.1.2)"] | |
[[package]] | |
name = "pygments" | |
version = "2.14.0" | |
description = "Pygments is a syntax highlighting package written in Python." | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[package.extras] | |
plugins = ["importlib-metadata"] | |
[[package]] | |
name = "pympler" | |
version = "1.0.1" | |
description = "A development tool to measure, monitor and analyze the memory behavior of Python objects." | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[[package]] | |
name = "pyparsing" | |
version = "3.0.9" | |
description = "pyparsing module - Classes and methods to define and execute parsing grammars" | |
category = "main" | |
optional = false | |
python-versions = ">=3.6.8" | |
[package.extras] | |
diagrams = ["railroad-diagrams", "jinja2"] | |
[[package]] | |
name = "pyrsistent" | |
version = "0.19.3" | |
description = "Persistent/Functional/Immutable data structures" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[[package]] | |
name = "pytest" | |
version = "7.2.2" | |
description = "pytest: simple powerful testing with Python" | |
category = "dev" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
attrs = ">=19.2.0" | |
colorama = {version = "*", markers = "sys_platform == \"win32\""} | |
exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""} | |
iniconfig = "*" | |
packaging = "*" | |
pluggy = ">=0.12,<2.0" | |
tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""} | |
[package.extras] | |
testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"] | |
[[package]] | |
name = "python-dateutil" | |
version = "2.8.2" | |
description = "Extensions to the standard Python datetime module" | |
category = "main" | |
optional = false | |
python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" | |
[package.dependencies] | |
six = ">=1.5" | |
[[package]] | |
name = "python-json-logger" | |
version = "2.0.7" | |
description = "A python library adding a json log formatter" | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[[package]] | |
name = "pytz" | |
version = "2022.7.1" | |
description = "World timezone definitions, modern and historical" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[[package]] | |
name = "pytz-deprecation-shim" | |
version = "0.1.0.post0" | |
description = "Shims to make deprecation of pytz easier" | |
category = "main" | |
optional = false | |
python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7" | |
[package.dependencies] | |
"backports.zoneinfo" = {version = "*", markers = "python_version >= \"3.6\" and python_version < \"3.9\""} | |
tzdata = {version = "*", markers = "python_version >= \"3.6\""} | |
[[package]] | |
name = "pywin32" | |
version = "305" | |
description = "Python for Window Extensions" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[[package]] | |
name = "pywinpty" | |
version = "2.0.10" | |
description = "Pseudo terminal support for Windows from Python." | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[[package]] | |
name = "pyyaml" | |
version = "6.0" | |
description = "YAML parser and emitter for Python" | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[[package]] | |
name = "pyzmq" | |
version = "25.0.1" | |
description = "Python bindings for 0MQ" | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[package.dependencies] | |
cffi = {version = "*", markers = "implementation_name == \"pypy\""} | |
[[package]] | |
name = "regex" | |
version = "2022.10.31" | |
description = "Alternative regular expression module, to replace re." | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[[package]] | |
name = "requests" | |
version = "2.28.2" | |
description = "Python HTTP for Humans." | |
category = "main" | |
optional = false | |
python-versions = ">=3.7, <4" | |
[package.dependencies] | |
certifi = ">=2017.4.17" | |
charset-normalizer = ">=2,<4" | |
idna = ">=2.5,<4" | |
urllib3 = ">=1.21.1,<1.27" | |
[package.extras] | |
socks = ["PySocks (>=1.5.6,!=1.5.7)"] | |
use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"] | |
[[package]] | |
name = "rfc3339-validator" | |
version = "0.1.4" | |
description = "A pure python RFC3339 validator" | |
category = "main" | |
optional = false | |
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" | |
[package.dependencies] | |
six = "*" | |
[[package]] | |
name = "rfc3986-validator" | |
version = "0.1.1" | |
description = "Pure python rfc3986 validator" | |
category = "main" | |
optional = false | |
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" | |
[[package]] | |
name = "rich" | |
version = "13.3.2" | |
description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7.0" | |
[package.dependencies] | |
markdown-it-py = ">=2.2.0,<3.0.0" | |
pygments = ">=2.13.0,<3.0.0" | |
typing-extensions = {version = ">=4.0.0,<5.0", markers = "python_version < \"3.9\""} | |
[package.extras] | |
jupyter = ["ipywidgets (>=7.5.1,<9)"] | |
[[package]] | |
name = "s3transfer" | |
version = "0.6.0" | |
description = "An Amazon S3 Transfer Manager" | |
category = "main" | |
optional = false | |
python-versions = ">= 3.7" | |
[package.dependencies] | |
botocore = ">=1.12.36,<2.0a.0" | |
[package.extras] | |
crt = ["botocore[crt] (>=1.20.29,<2.0a.0)"] | |
[[package]] | |
name = "scipy" | |
version = "1.9.3" | |
description = "Fundamental algorithms for scientific computing in Python" | |
category = "main" | |
optional = false | |
python-versions = ">=3.8" | |
[package.dependencies] | |
numpy = ">=1.18.5,<1.26.0" | |
[package.extras] | |
test = ["pytest", "pytest-cov", "pytest-xdist", "asv", "mpmath", "gmpy2", "threadpoolctl", "scikit-umfpack"] | |
doc = ["sphinx (!=4.1.0)", "pydata-sphinx-theme (==0.9.0)", "sphinx-panels (>=0.5.2)", "matplotlib (>2)", "numpydoc", "sphinx-tabs"] | |
dev = ["mypy", "typing-extensions", "pycodestyle", "flake8"] | |
[[package]] | |
name = "semver" | |
version = "2.13.0" | |
description = "Python helper for Semantic Versioning (http://semver.org/)" | |
category = "main" | |
optional = false | |
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" | |
[[package]] | |
name = "send2trash" | |
version = "1.8.0" | |
description = "Send file to trash natively under Mac OS X, Windows and Linux." | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[package.extras] | |
nativelib = ["pyobjc-framework-cocoa", "pywin32"] | |
objc = ["pyobjc-framework-cocoa"] | |
win32 = ["pywin32"] | |
[[package]] | |
name = "sentencepiece" | |
version = "0.1.97" | |
description = "SentencePiece python wrapper" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[[package]] | |
name = "setuptools-scm" | |
version = "7.1.0" | |
description = "the blessed package to manage your versions by scm tags" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
packaging = ">=20.0" | |
tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""} | |
typing-extensions = "*" | |
[package.extras] | |
test = ["pytest (>=6.2)", "virtualenv (>20)"] | |
toml = ["setuptools (>=42)"] | |
[[package]] | |
name = "six" | |
version = "1.16.0" | |
description = "Python 2 and 3 compatibility utilities" | |
category = "main" | |
optional = false | |
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" | |
[[package]] | |
name = "smmap" | |
version = "5.0.0" | |
description = "A pure Python implementation of a sliding window memory map manager" | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[[package]] | |
name = "sniffio" | |
version = "1.3.0" | |
description = "Sniff out which async library your code is running under" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[[package]] | |
name = "soupsieve" | |
version = "2.4" | |
description = "A modern CSS selector implementation for Beautiful Soup." | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[[package]] | |
name = "stack-data" | |
version = "0.6.2" | |
description = "Extract data from python stack frames and tracebacks for informative displays" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[package.dependencies] | |
asttokens = ">=2.1.0" | |
executing = ">=1.2.0" | |
pure-eval = "*" | |
[package.extras] | |
tests = ["pytest", "typeguard", "pygments", "littleutils", "cython"] | |
[[package]] | |
name = "stmol" | |
version = "0.0.9" | |
description = "Streamlit component for molecular visualization" | |
category = "main" | |
optional = false | |
python-versions = ">=3.6" | |
[package.dependencies] | |
ipyspeck = "0.6.1" | |
ipywidgets = "7.6.3" | |
py3Dmol = "*" | |
streamlit = ">=0.63" | |
[[package]] | |
name = "streamlit" | |
version = "1.17.0" | |
description = "The fastest way to build data apps in Python" | |
category = "main" | |
optional = false | |
python-versions = ">=3.7, !=3.9.7" | |
[package.dependencies] | |
altair = ">=3.2.0" | |
blinker = ">=1.0.0" | |
cachetools = ">=4.0" | |
click = ">=7.0" | |
gitpython = "!=3.1.19" | |
importlib-metadata = ">=1.4" | |
numpy = "*" | |
packaging = ">=14.1" | |
pandas = ">=0.21.0" | |
pillow = ">=6.2.0" | |
protobuf = ">=3.12,<4" | |
pyarrow = ">=4.0" | |
pydeck = ">=0.1.dev5" | |
pympler = ">=0.9" | |
python-dateutil = "*" | |
requests = ">=2.4" | |
rich = ">=10.11.0" | |
semver = "*" | |
toml = "*" | |
tornado = ">=5.0" | |
typing-extensions = ">=3.10.0.0" | |
tzlocal = ">=1.1" | |
validators = ">=0.2" | |
watchdog = {version = "*", markers = "platform_system != \"Darwin\""} | |
[package.extras] | |
snowflake = ["snowflake-snowpark-python"] | |
[[package]] | |
name = "sympy" | |
version = "1.11.1" | |
description = "Computer algebra system (CAS) in Python" | |
category = "main" | |
optional = false | |
python-versions = ">=3.8" | |
[package.dependencies] | |
mpmath = ">=0.19" | |
[[package]] | |
name = "tape-proteins" | |
version = "0.5" | |
description = "Repostory of Protein Benchmarking and Modeling" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[package.dependencies] | |
biopython = "*" | |
boto3 = "*" | |
filelock = "*" | |
lmdb = "*" | |
requests = "*" | |
scipy = "*" | |
tensorboardX = "*" | |
tqdm = "*" | |
[[package]] | |
name = "tensorboardx" | |
version = "2.6" | |
description = "TensorBoardX lets you watch Tensors Flow without Tensorflow" | |
category = "main" | |
optional = false | |
python-versions = "*" | |
[package.dependencies] | |
numpy = "*" | |
packaging = "*" | |
protobuf = ">=3.8.0,<4" | |
[[package]] | |
name = "terminado" | |
version = "0.17.1" | |
description = "Tornado websocket backend for the Xterm.js Javascript terminal emulator library." | |
category = "main" | |
optional = false | |
python-versions = ">=3.7" | |
[package.dependencies] | |
ptyprocess = {version = "*", markers = "os_name != \"nt\""} | |
pywinpty = {version = ">=1.1.0", markers = "os_name == \"nt\""} | |
tornado = ">=6.1.0" | |
[package.extras] | |
docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"] | |
test = ["pre-commit", "pytest-timeout", "pytest (>=7.0)"] | |
[[package]] | |
name = "tinycss2" | |
version = "1.2.1" | |
description = "A tiny CSS parser" | |
category = "main" | |
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