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Mention third view in Docs
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hexviz/pages/3_📄Documentation.py
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knowledge contained in pLMs.
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## How to use Hexviz
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There are
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1. <a href="{URL}Attention_Visualization" target="_self">🧬Attention Visualization</a> Shows attention weights from a single head as red bars between residues on a protein structure.
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2. <a href="{URL}Identify_Interesting_Heads" target="_self">🗺️Identify Interesting Heads</a> Plots attention weights between residues as a heatmap for each head in the model.
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The first view is the meat of the application and is where you can investigate
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how attention patterns map onto the structure of a protein you're interested in.
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knowledge contained in pLMs.
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## How to use Hexviz
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There are three views:
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1. <a href="{URL}Attention_Visualization" target="_self">🧬Attention Visualization</a> Shows attention weights from a single head as red bars between residues on a protein structure.
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2. <a href="{URL}Identify_Interesting_Heads" target="_self">🗺️Identify Interesting Heads</a> Plots attention weights between residues as a heatmap for each head in the model.
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3. <a href="{URL}Birds_Eye_View" target="_self">🦅Bird's Eye View</a> Attention on structures in a big grid over multiple heads and layers. The first view on steroids but with the cost of being quite slow for large models or long sequences.
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The first view is the meat of the application and is where you can investigate
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how attention patterns map onto the structure of a protein you're interested in.
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