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hexviz

Commit History

Fix README typo
28de159

aksell commited on

Change default selected head to a more interesting one
fb742f5

aksell commited on

Tweak interesting heads view
18e02d3

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Add text and slice selection to head selection view
51f3451

aksell commited on

Rename app.py to Attention_Visualization.py
a9afebb

aksell commited on

First draft of "Find interesting heads" page
2410bbd

aksell commited on

Add table of top_n attention pairs
b7cb94d

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Make model selector more compact
1b13d7f

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Add sections to sidebar
b3a37f0

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Move attention parameters to sidebar
6bb6142

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Label top n attention pairs
4355c21

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Change default layer and tweak text
beb84f6

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Allow highlighting of residues
61419b7

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Allow selecting individual chains
58b87e3

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Plot avg attention not sum
3de389d

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Reduce attention cylinder size
97dc04c

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Acknowledge provis in the README
2baeea3

aksell commited on

Remove Prot-T5 and ProtGPT2
386fb31

aksell commited on

Link to provis as a source for the attention visualization
6002f51

aksell commited on

Changet test structure in get_structure
d1b48a1

aksell commited on

Clean up view
bf964bb

aksell commited on

Show EC class if using ZymCTRL and EC class is available in PDB
79ff34a

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Add PROT BERT
1c423ed

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Update requirements.txt from poetry
02840f4

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Link to RCSB structure
f60f302

aksell commited on

Hide min attention slider in expander
c621eec

aksell commited on

Split attention.py into attention.py and models.py
eb9ae1f

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Cache TAPE-BERT loading
e07549d

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Disable ProtGPT2
4a42326

aksell commited on

Add ProtGPT2 model
2338bb4

aksell commited on

Remove unused debuging code path
1431daf

aksell commited on

Update text and title
db81f50

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Cache get_attention and get_structure
ff8eaa8

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Add ZymCTRL model
cfba77f

aksell commited on

WIP: Start adding ProtT5
5b6d16d

aksell commited on

Remove sidebar title
4ad80db

aksell commited on

Remove redundant app.py
6fea74c

aksell commited on

Downgrade streamlit - 1.17
0f66182

aksell commited on

Restore old README.md
61d307b

aksell commited on

Use python 3.8.9
9938060

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Simplify README.md metadata
b7bfd49

aksell commited on

Move app.py to top level
59008d0

aksell commited on

Export requirements.txt from poetry
53ba5a6

aksell commited on

Add default huggingface .gitatributes file
c42816d

aksell commited on

Add metadata to run in huggingface spaces
e2061b9

aksell commited on

Rename project protention -> hexviz
28d4b1e

aksell commited on

Fix zero indexing of head and layer selector
9a7dfe2

aksell commited on

Visualize attention pairs on structure
58c7b8d

aksell commited on

Add ModelType enum and Model class to hold layers and head count
ebbe380

aksell commited on

Implement get_attention for tape BERT
466a8f2

aksell commited on