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hexviz

Commit History

Allow selecting individual chains
58b87e3

aksell commited on

Plot avg attention not sum
3de389d

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Reduce attention cylinder size
97dc04c

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Acknowledge provis in the README
2baeea3

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Remove Prot-T5 and ProtGPT2
386fb31

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Link to provis as a source for the attention visualization
6002f51

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Changet test structure in get_structure
d1b48a1

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Clean up view
bf964bb

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Show EC class if using ZymCTRL and EC class is available in PDB
79ff34a

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Add PROT BERT
1c423ed

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Update requirements.txt from poetry
02840f4

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Link to RCSB structure
f60f302

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Hide min attention slider in expander
c621eec

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Split attention.py into attention.py and models.py
eb9ae1f

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Cache TAPE-BERT loading
e07549d

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Disable ProtGPT2
4a42326

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Add ProtGPT2 model
2338bb4

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Remove unused debuging code path
1431daf

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Update text and title
db81f50

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Cache get_attention and get_structure
ff8eaa8

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Add ZymCTRL model
cfba77f

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WIP: Start adding ProtT5
5b6d16d

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Remove sidebar title
4ad80db

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Remove redundant app.py
6fea74c

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Downgrade streamlit - 1.17
0f66182

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Restore old README.md
61d307b

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Use python 3.8.9
9938060

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Simplify README.md metadata
b7bfd49

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Move app.py to top level
59008d0

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Export requirements.txt from poetry
53ba5a6

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Add default huggingface .gitatributes file
c42816d

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Add metadata to run in huggingface spaces
e2061b9

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Rename project protention -> hexviz
28d4b1e

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Fix zero indexing of head and layer selector
9a7dfe2

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Visualize attention pairs on structure
58c7b8d

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Add ModelType enum and Model class to hold layers and head count
ebbe380

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Implement get_attention for tape BERT
466a8f2

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Add get_sequence
b7ab123

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Add get_protT5
87c0dbc

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Add .gitignore
f12036e

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Add get_structure
f8402f9

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Add basic streamlit view using stmol
08dc5f2

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Initialize Poetry project
b92b272

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