#!/bin/bash

# Step 1: Install Miniconda in your user's home directory
# wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
# bash miniconda.sh -b -p ~/miniconda  # Install in your home directory

# # Step 2: Initialize Miniconda
# source ~/miniconda/etc/profile.d/conda.sh
# conda init bash

# Step 3: Change to the desired directory and make install.sh executable, then run it
git clone https://github.com/StanfordMIMI/Comp2Comp.git /home/user/app/C2C
cd /home/user/app/C2C
pip install -e .

# cd /home/user/app/C2C
# chmod +x bin/C2C
# # conda init bash
# # conda activate c2c_env
# ./bin/C2C aaa -i temp_dicom_dir

# ls 

# chmod +x bin/install.sh  # Make install.sh executable
# ./bin/install.sh  # Execute the installation script

# conda activate c2c_env