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---
title: README
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# The mission of the Allen Institute is to understand the principles that govern life, and to advance health. 
<h4 style="margin-bottom:0">Science Programs at Allen Institute</h4>
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<a href="https://alleninstitute.org/division/brain-science/">
  <img height=40 width=400 src="https://alleninstitute.org/wp-content/uploads/2024/04/ai_brain_science_logo.png" alt="Allen Institute for Brain Science">
</a>
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<a href="https://alleninstitute.org/division/cell-science/">
  <img  height=40 width=400 src="https://alleninstitute.org/wp-content/uploads/2024/04/ai_cell_science_logo.png" alt="Allen Institute for Cell Science">
</a>
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<a href="https://alleninstitute.org/division/frontiers-group/">
  <img  height=40 width=400 src="https://alleninstitute.org/wp-content/uploads/2024/04/ai_frontiers_logo.png" alt="Paul G. Allen Frontiers Group">
</a>
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<a href="https://alleninstitute.org/division/immunology/">
  <img  height=40 width=400 src="https://alleninstitute.org/wp-content/uploads/2024/04/ai_immunology_logo.png" alt="Allen Institute for Immunology">
</a>
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<a href="https://alleninstitute.org/division/neural-dynamics/">
  <img  height=40 width=400  src="https://alleninstitute.org/wp-content/uploads/2024/04/ai_neural_dynamics_logo.png" alt="Allen Institute for Neural Dynamics">
</a>
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<a href="https://alleninstitute.org/division/seattle-hub-for-synthetic-biology/">
  <img  height=40 width=400  src="https://alleninstitute.org/wp-content/uploads/2024/04/seattle_hub_logo.png" alt="Seattle Hub for Synthetic Biology">
</a>
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      <h3>Explore our open data portals </h3>
        <h4 style="margin:0; padding:0;">Serving the scientific community is at the center of our mission to expand our understanding of human health and disease</h4>
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      <h3>Collaborative work</h3>
      <h4 style="margin:0; padding:0;">Access our shared open resources repositories</h4>
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    <a href="https://portal.brain-map.org/?utm_source=alleninstitute.org&#038;utm_medium=OpenScienceTools" target="">
<img height=400 width=400 src="https://alleninstitute.org/wp-content/uploads/2024/04/MERFISH-Multi-scroll-header.jpeg"
		alt="Merfish brain image"
	/></a>
    <a href="https://portal.brain-map.org/?utm_source=alleninstitute.org&#038;utm_medium=OpenScienceTools" target="">Allen Brain Map</a>
 - Neuroscience reference atlases, cell type data, modeling tools, and more.
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     <a  href="https://www.allencell.org/?utm_source=alleninstitute.org&#038;utm_medium=OpenScienceTools" target="">
<img height=400 width=400 src="https://alleninstitute.org/wp-content/uploads/2023/01/Variance_-IntegratedCellTilted.jpeg"
		alt="Image showing human cell variance"
	/></a>
    <a href="https://www.allencell.org/?utm_source=alleninstitute.org&#038;utm_medium=OpenScienceTools" target="">Allen Cell Explorer</a>
 - Cell biology resources, hiPSC lines, plasmids, imaging software, 3D images and models, and more.
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    <a href="https://www.microns-explorer.orghttps://www.microns-explorer.org/" target="">
<img height=400 width=400 src="https://alleninstitute.org/wp-content/uploads/2020/10/MICrONS-EM-e1714157281329.jpg"
		alt="Microns image from the Neural Coding team at the Allen Institute for Brain Science. This image shows colorful renderings of neurons and their synaptic connections."
	/></a>
    <a href="https://www.microns-explorer.orghttps://www.microns-explorer.org/" target="">MICrONS Explorer</a>
 - A virtual cortex observatory that includes electron microscopy reconstructions of mouse visual cortex.
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<img height=400 width=400 src="https://alleninstitute.org/wp-content/uploads/2024/09/Immune-Atlas-Umap.jpg"
		alt="UMAP of Immune Health Atlas"
	/>
    <a href="https://explore.allenimmunology.org/?utm_source=alleninstitute.org&#038;utm_medium=OpenScienceTools" target="">Human Immune System Explorer</a>
- Immunology datasets from longitudinal human studies, data visualizations, and more. 
  </td>
<td align="center" >
  <img height=200 width=400 object-fit="cover" src="https://alleninstitute.org/wp-content/uploads/2022/11/Neural-Dynamics-Blue-Brain-1920x1080-1-e1714065152177.jpg"
		alt="Colorful scientific image showing neuronal projections across the mouse brain"
	/>
  <a href="https://www.allenneuraldynamics.org/?utm_source=alleninstitute.org&#038;utm_medium=OpenScienceTools" target="">Neural Dynamics</a>
 - Neuroscience hardware, software, plasmids, data portals, and protocols.
</td>
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     <a  href="https://www.portal.brain-bican.org/%20" target="">
<img height=400 width=400 src="https://alleninstitute.org/wp-content/uploads/2024/09/BICANHeroImage-ezgif.com-optijpeg-1.jpg"
		alt="A scientist handles frozen brain tissue"
	/></a>
    <a href="https://www.portal.brain-bican.org/%20" target="">BICAN</a>
 - BICAN aims to create an open-access compendium of data and tools to enhance understanding of brain structure and function, accelerating research.
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