Update code/pdb_featureVector.py

code/pdb_featureVector.py

@@ -1407,10 +1407,13 @@ def pdb(input_set, mode, impute):
                 pdb_path = Path(path_to_output_files / 'swissmodel_structures' / f'{up_id_}_{id_}_{score_}.txt')
 
             pdbSequence = data.at[i, 'pdbSequence']
+            st.write('pdbSequence on 3D part')
+            st.write(pdbSequence)
             source = data.at[i, 'source']
             chain = data.at[i, 'chain']
             uniprotID = data.at[i, 'uniprotID']
             pdbID = data.at[i, 'pdbID']
+            st.write('So far so good!!!!!')
             alignments = get_alignments_3D(uniprotID, 'nan', pdb_path, pdbSequence, source, chain, pdbID, mode,
                                            Path(path_to_output_files / '3D_alignment'), file_format='gzip')
             mutPos = data.at[i, 'mutationPositionOnPDB']