add demo video
Browse files
app.py
CHANGED
@@ -41,7 +41,8 @@ about = """ ## Background
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1. **Adaptability Model**: Trained on Molecular Dynamics (MD) data, our model predicts flexibility at the atomic level.
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2. **Correlation**: The adaptability predictions correlate well with the RMSD (Root Mean Square Deviation) from ESM3 sampling.
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3. **Noise Application**: We apply noise to simulate protein flexibility, mimicking MD-like behavior.
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-
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## About
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This demo uses the ESM3 model to predict protein structures from PDB files.
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It runs multiple predictions with added noise and simulated MD frames, displaying the best result based on the lowest cRMSD.
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@@ -354,6 +355,11 @@ def create_demo():
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gr.Markdown(about)
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with gr.Column():
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gr.Markdown(howtouse)
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with gr.Row():
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with gr.Column(scale=1):
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pdb_file = gr.File(label="Upload PDB file")
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1. **Adaptability Model**: Trained on Molecular Dynamics (MD) data, our model predicts flexibility at the atomic level.
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2. **Correlation**: The adaptability predictions correlate well with the RMSD (Root Mean Square Deviation) from ESM3 sampling.
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3. **Noise Application**: We apply noise to simulate protein flexibility, mimicking MD-like behavior.
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"""
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about1 = """
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## About
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This demo uses the ESM3 model to predict protein structures from PDB files.
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It runs multiple predictions with added noise and simulated MD frames, displaying the best result based on the lowest cRMSD.
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gr.Markdown(about)
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with gr.Column():
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gr.Markdown(howtouse)
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with gr.Row():
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gr.Markdown(about1)
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with gr.Accordion(label="watch presentation video", open=False):
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with gr.Row():
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gr.Video(value="demovideo/demo.mp4", label="MISATO Video Submission")
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with gr.Row():
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with gr.Column(scale=1):
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pdb_file = gr.File(label="Upload PDB file")
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