simonduerr commited on
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1 Parent(s): c80455b

Update app.py

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Files changed (1) hide show
  1. app.py +27 -2
app.py CHANGED
@@ -122,7 +122,20 @@ with gr.Blocks() as demo:
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  search_columns=["Model"],
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  datatype=["str", "markdown", "markdown", "number","number","number","number","number","number","number","number","number","number"],
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  filter_columns=["Arch"],
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- )
 
 
 
 
 
 
 
 
 
 
 
 
 
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  with gr.Tab("πŸ₯‡ PLINDER Leaderboard"):
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  gr.Markdown("""## PLINDER Leaderboard
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  Evaluating Protein-Ligand prediction
@@ -134,7 +147,19 @@ with gr.Blocks() as demo:
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  search_columns=["Model"],
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  datatype=["str", "markdown", "markdown", "number", "number","number","number","number","number","number","number","number","number"],
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  filter_columns=["Arch"],
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- )
 
 
 
 
 
 
 
 
 
 
 
 
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  with gr.Tab("βœ‰οΈ Submit"):
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  gr.Markdown("""## Submit your model
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  Submit your model to the leaderboard using the below form AFTER following the following steps:
 
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  search_columns=["Model"],
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  datatype=["str", "markdown", "markdown", "number","number","number","number","number","number","number","number","number","number"],
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  filter_columns=["Arch"],
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+ )
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+ gr.Markdown("""
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+ ### Explanations:
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+
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+ Description of metrics in these articles:
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+ - https://www.biorxiv.org/content/10.1101/2024.07.17.603980v4
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+
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+ - **DockFormerPP** [Description of model](https://nips.cc/virtual/2024/102507)
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+ - **DFM-Dock** [Description of model](https://nips.cc/virtual/2024/102496)
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+ - **EquiMPNN IITM-Bisect** [Description of model](https://arxiv.org/abs/2102.09844)
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+ - **IITM-Bisect** [Description of model](https://drive.google.com/file/d/1xsefc3N9-Hw80o2ne9AsKt3QjGCsoYO0/view?usp=sharing)
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+
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+ **Blackhole** puts all coordinates of the ligand and receptor at two points 3.7 A away from each other.
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+ """)
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  with gr.Tab("πŸ₯‡ PLINDER Leaderboard"):
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  gr.Markdown("""## PLINDER Leaderboard
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  Evaluating Protein-Ligand prediction
 
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  search_columns=["Model"],
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  datatype=["str", "markdown", "markdown", "number", "number","number","number","number","number","number","number","number","number"],
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  filter_columns=["Arch"],
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+ )
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+ gr.Markdown("""
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+ ### Explanations
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+
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+ Description of used metrics:
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+ - https://pubmed.ncbi.nlm.nih.gov/37795762/
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+ - https://www.biorxiv.org/content/10.1101/2024.07.17.603955v3
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+
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+
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+ - **DockFormer** [Description of model](https://nips.cc/virtual/2024/102507)
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+ - **Blackhole PLI** generates a minimized ligand conformer with rdkit and then places all protein atoms to one point in space that is just over 6 A distance from any point of the ligand.
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+ - **Blackhole PLI Busted** is simply putting all ligand coordinates in one place 6.02 A away from the positions where all protein coordinates are set.
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+ """)
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  with gr.Tab("βœ‰οΈ Submit"):
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  gr.Markdown("""## Submit your model
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  Submit your model to the leaderboard using the below form AFTER following the following steps: