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simonduerr
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β’
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Parent(s):
c80455b
Update app.py
Browse files
app.py
CHANGED
@@ -122,7 +122,20 @@ with gr.Blocks() as demo:
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search_columns=["Model"],
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datatype=["str", "markdown", "markdown", "number","number","number","number","number","number","number","number","number","number"],
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filter_columns=["Arch"],
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with gr.Tab("π₯ PLINDER Leaderboard"):
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gr.Markdown("""## PLINDER Leaderboard
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Evaluating Protein-Ligand prediction
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@@ -134,7 +147,19 @@ with gr.Blocks() as demo:
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search_columns=["Model"],
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datatype=["str", "markdown", "markdown", "number", "number","number","number","number","number","number","number","number","number"],
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filter_columns=["Arch"],
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with gr.Tab("βοΈ Submit"):
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gr.Markdown("""## Submit your model
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Submit your model to the leaderboard using the below form AFTER following the following steps:
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search_columns=["Model"],
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datatype=["str", "markdown", "markdown", "number","number","number","number","number","number","number","number","number","number"],
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filter_columns=["Arch"],
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gr.Markdown("""
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### Explanations:
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Description of metrics in these articles:
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- https://www.biorxiv.org/content/10.1101/2024.07.17.603980v4
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- **DockFormerPP** [Description of model](https://nips.cc/virtual/2024/102507)
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- **DFM-Dock** [Description of model](https://nips.cc/virtual/2024/102496)
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- **EquiMPNN IITM-Bisect** [Description of model](https://arxiv.org/abs/2102.09844)
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- **IITM-Bisect** [Description of model](https://drive.google.com/file/d/1xsefc3N9-Hw80o2ne9AsKt3QjGCsoYO0/view?usp=sharing)
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**Blackhole** puts all coordinates of the ligand and receptor at two points 3.7 A away from each other.
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""")
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with gr.Tab("π₯ PLINDER Leaderboard"):
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gr.Markdown("""## PLINDER Leaderboard
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Evaluating Protein-Ligand prediction
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search_columns=["Model"],
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datatype=["str", "markdown", "markdown", "number", "number","number","number","number","number","number","number","number","number"],
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filter_columns=["Arch"],
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)
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gr.Markdown("""
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### Explanations
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Description of used metrics:
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- https://pubmed.ncbi.nlm.nih.gov/37795762/
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- https://www.biorxiv.org/content/10.1101/2024.07.17.603955v3
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- **DockFormer** [Description of model](https://nips.cc/virtual/2024/102507)
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- **Blackhole PLI** generates a minimized ligand conformer with rdkit and then places all protein atoms to one point in space that is just over 6 A distance from any point of the ligand.
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- **Blackhole PLI Busted** is simply putting all ligand coordinates in one place 6.02 A away from the positions where all protein coordinates are set.
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""")
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with gr.Tab("βοΈ Submit"):
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gr.Markdown("""## Submit your model
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Submit your model to the leaderboard using the below form AFTER following the following steps:
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