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743b6b7
1
Parent(s):
242350b
fix
Browse files
app.py
CHANGED
@@ -96,12 +96,14 @@ def initiate_run():
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def parse_gene_annotations(file_path):
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gene_dict = {}
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with open(file_path, 'r') as file:
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headers = file.readline().strip().split('\t') #
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for line in file:
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values = line.strip().split('\t')
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return gene_dict
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# Replace 'your_annotation_file.txt' with the path to your actual gene annotation file
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def parse_gene_annotations(file_path):
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gene_dict = {}
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with open(file_path, 'r') as file:
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headers = file.readline().strip().split('\t') # Assuming tab-delimited file
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for line in file:
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values = line.strip().split('\t')
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# Use min to avoid IndexError if there are fewer values than headers
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gene_info = {headers[i]: values[i] if i < len(values) else '' for i in range(len(headers))}
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approved_symbol = gene_info.get('Approved symbol', 'Unknown') # Use .get to avoid KeyError
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if approved_symbol != 'Unknown': # Only add if there is an approved symbol
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gene_dict[approved_symbol] = gene_info
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return gene_dict
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# Replace 'your_annotation_file.txt' with the path to your actual gene annotation file
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