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# Note: Work in progress
from __future__ import absolute_import
import os
import os.path
import re
import codecs
import textwrap
from datetime import datetime
from functools import partial
from collections import defaultdict
from xml.sax.saxutils import escape as html_escape
try:
from StringIO import StringIO
except ImportError:
from io import StringIO # does not support writing 'str' in Py2
from . import Version
from .Code import CCodeWriter
from .. import Utils
class AnnotationCCodeWriter(CCodeWriter):
# also used as marker for detection of complete code emission in tests
COMPLETE_CODE_TITLE = "Complete cythonized code"
def __init__(self, create_from=None, buffer=None, copy_formatting=True, show_entire_c_code=False, source_desc=None):
CCodeWriter.__init__(self, create_from, buffer, copy_formatting=copy_formatting)
self.show_entire_c_code = show_entire_c_code
if create_from is None:
self.annotation_buffer = StringIO()
self.last_annotated_pos = None
# annotations[filename][line] -> [(column, AnnotationItem)*]
self.annotations = defaultdict(partial(defaultdict, list))
# code[filename][line] -> str
self.code = defaultdict(partial(defaultdict, str))
# scopes[filename][line] -> set(scopes)
self.scopes = defaultdict(partial(defaultdict, set))
else:
# When creating an insertion point, keep references to the same database
self.annotation_buffer = create_from.annotation_buffer
self.annotations = create_from.annotations
self.code = create_from.code
self.scopes = create_from.scopes
self.last_annotated_pos = create_from.last_annotated_pos
def create_new(self, create_from, buffer, copy_formatting):
return AnnotationCCodeWriter(create_from, buffer, copy_formatting)
def _write_to_buffer(self, s):
self.buffer.write(s)
self.annotation_buffer.write(s)
def mark_pos(self, pos, trace=True):
if pos is not None:
CCodeWriter.mark_pos(self, pos, trace)
if self.funcstate and self.funcstate.scope:
# lambdas and genexprs can result in multiple scopes per line => keep them in a set
self.scopes[pos[0].filename][pos[1]].add(self.funcstate.scope)
if self.last_annotated_pos:
source_desc, line, _ = self.last_annotated_pos
pos_code = self.code[source_desc.filename]
pos_code[line] += self.annotation_buffer.getvalue()
self.annotation_buffer = StringIO()
self.last_annotated_pos = pos
def annotate(self, pos, item):
self.annotations[pos[0].filename][pos[1]].append((pos[2], item))
def _css(self):
"""css template will later allow to choose a colormap"""
css = [self._css_template]
for i in range(255):
color = u"FFFF%02x" % int(255.0 // (1.0 + i/10.0))
css.append('.cython.score-%d {background-color: #%s;}' % (i, color))
try:
from pygments.formatters import HtmlFormatter
except ImportError:
pass
else:
css.append(HtmlFormatter().get_style_defs('.cython'))
return '\n'.join(css)
_css_template = textwrap.dedent("""
body.cython { font-family: courier; font-size: 12; }
.cython.tag { }
.cython.line { color: #000000; margin: 0em }
.cython.code { font-size: 9; color: #444444; display: none; margin: 0px 0px 0px 8px; border-left: 8px none; }
.cython.line .run { background-color: #B0FFB0; }
.cython.line .mis { background-color: #FFB0B0; }
.cython.code.run { border-left: 8px solid #B0FFB0; }
.cython.code.mis { border-left: 8px solid #FFB0B0; }
.cython.code .py_c_api { color: red; }
.cython.code .py_macro_api { color: #FF7000; }
.cython.code .pyx_c_api { color: #FF3000; }
.cython.code .pyx_macro_api { color: #FF7000; }
.cython.code .refnanny { color: #FFA000; }
.cython.code .trace { color: #FFA000; }
.cython.code .error_goto { color: #FFA000; }
.cython.code .coerce { color: #008000; border: 1px dotted #008000 }
.cython.code .py_attr { color: #FF0000; font-weight: bold; }
.cython.code .c_attr { color: #0000FF; }
.cython.code .py_call { color: #FF0000; font-weight: bold; }
.cython.code .c_call { color: #0000FF; }
""")
# on-click toggle function to show/hide C source code
_onclick_attr = ' onclick="{0}"'.format((
"(function(s){"
" s.display = s.display === 'block' ? 'none' : 'block'"
"})(this.nextElementSibling.style)"
).replace(' ', '') # poor dev's JS minification
)
def save_annotation(self, source_filename, target_filename, coverage_xml=None):
with Utils.open_source_file(source_filename) as f:
code = f.read()
generated_code = self.code.get(source_filename, {})
c_file = Utils.decode_filename(os.path.basename(target_filename))
html_filename = os.path.splitext(target_filename)[0] + ".html"
with codecs.open(html_filename, "w", encoding="UTF-8") as out_buffer:
out_buffer.write(self._save_annotation(code, generated_code, c_file, source_filename, coverage_xml))
def _save_annotation_header(self, c_file, source_filename, coverage_timestamp=None):
coverage_info = ''
if coverage_timestamp:
coverage_info = u' with coverage data from {timestamp}'.format(
timestamp=datetime.fromtimestamp(int(coverage_timestamp) // 1000))
outlist = [
textwrap.dedent(u'''\
<!DOCTYPE html>
<!-- Generated by Cython {watermark} -->
<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>Cython: {filename}</title>
<style type="text/css">
{css}
</style>
</head>
<body class="cython">
<p><span style="border-bottom: solid 1px grey;">Generated by Cython {watermark}</span>{more_info}</p>
<p>
<span style="background-color: #FFFF00">Yellow lines</span> hint at Python interaction.<br />
Click on a line that starts with a "<code>+</code>" to see the C code that Cython generated for it.
</p>
''').format(css=self._css(), watermark=Version.watermark,
filename=os.path.basename(source_filename) if source_filename else '',
more_info=coverage_info)
]
if c_file:
outlist.append(u'<p>Raw output: <a href="%s">%s</a></p>\n' % (c_file, c_file))
return outlist
def _save_annotation_footer(self):
return (u'</body></html>\n',)
def _save_annotation(self, code, generated_code, c_file=None, source_filename=None, coverage_xml=None):
"""
lines : original cython source code split by lines
generated_code : generated c code keyed by line number in original file
target filename : name of the file in which to store the generated html
c_file : filename in which the c_code has been written
"""
if coverage_xml is not None and source_filename:
coverage_timestamp = coverage_xml.get('timestamp', '').strip()
covered_lines = self._get_line_coverage(coverage_xml, source_filename)
else:
coverage_timestamp = covered_lines = None
annotation_items = dict(self.annotations[source_filename])
scopes = dict(self.scopes[source_filename])
outlist = []
outlist.extend(self._save_annotation_header(c_file, source_filename, coverage_timestamp))
outlist.extend(self._save_annotation_body(code, generated_code, annotation_items, scopes, covered_lines))
outlist.extend(self._save_annotation_footer())
return ''.join(outlist)
def _get_line_coverage(self, coverage_xml, source_filename):
coverage_data = None
for entry in coverage_xml.iterfind('.//class'):
if not entry.get('filename'):
continue
if (entry.get('filename') == source_filename or
os.path.abspath(entry.get('filename')) == source_filename):
coverage_data = entry
break
elif source_filename.endswith(entry.get('filename')):
coverage_data = entry # but we might still find a better match...
if coverage_data is None:
return None
return dict(
(int(line.get('number')), int(line.get('hits')))
for line in coverage_data.iterfind('lines/line')
)
def _htmlify_code(self, code, language):
try:
from pygments import highlight
from pygments.lexers import CythonLexer, CppLexer
from pygments.formatters import HtmlFormatter
except ImportError:
# no Pygments, just escape the code
return html_escape(code)
if language == "cython":
lexer = CythonLexer(stripnl=False, stripall=False)
elif language == "c/cpp":
lexer = CppLexer(stripnl=False, stripall=False)
else:
# unknown language, use fallback
return html_escape(code)
html_code = highlight(
code, lexer,
HtmlFormatter(nowrap=True))
return html_code
def _save_annotation_body(self, cython_code, generated_code, annotation_items, scopes, covered_lines=None):
outlist = [u'<div class="cython">']
pos_comment_marker = u'/* \N{HORIZONTAL ELLIPSIS} */\n'
new_calls_map = dict(
(name, 0) for name in
'refnanny trace py_macro_api py_c_api pyx_macro_api pyx_c_api error_goto'.split()
).copy
self.mark_pos(None)
def annotate(match):
group_name = match.lastgroup
calls[group_name] += 1
return u"<span class='%s'>%s</span>" % (
group_name, match.group(group_name))
lines = self._htmlify_code(cython_code, "cython").splitlines()
lineno_width = len(str(len(lines)))
if not covered_lines:
covered_lines = None
for k, line in enumerate(lines, 1):
try:
c_code = generated_code[k]
except KeyError:
c_code = ''
else:
c_code = _replace_pos_comment(pos_comment_marker, c_code)
if c_code.startswith(pos_comment_marker):
c_code = c_code[len(pos_comment_marker):]
c_code = html_escape(c_code)
calls = new_calls_map()
c_code = _parse_code(annotate, c_code)
score = (5 * calls['py_c_api'] + 2 * calls['pyx_c_api'] +
calls['py_macro_api'] + calls['pyx_macro_api'])
if c_code:
onclick = self._onclick_attr
expandsymbol = '+'
else:
onclick = ''
expandsymbol = ' '
covered = ''
if covered_lines is not None and k in covered_lines:
hits = covered_lines[k]
if hits is not None:
covered = 'run' if hits else 'mis'
outlist.append(
u'<pre class="cython line score-{score}"{onclick}>'
# generate line number with expand symbol in front,
# and the right number of digit
u'{expandsymbol}<span class="{covered}">{line:0{lineno_width}d}</span>: {code}</pre>\n'.format(
score=score,
expandsymbol=expandsymbol,
covered=covered,
lineno_width=lineno_width,
line=k,
code=line.rstrip(),
onclick=onclick,
))
if c_code:
outlist.append(u"<pre class='cython code score-{score} {covered}'>{code}</pre>".format(
score=score, covered=covered, code=c_code))
outlist.append(u"</div>")
# now the whole c-code if needed:
if self.show_entire_c_code:
outlist.append(u'<p><div class="cython">')
onclick_title = u"<pre class='cython line'{onclick}>+ {title}</pre>\n"
outlist.append(onclick_title.format(
onclick=self._onclick_attr,
title=AnnotationCCodeWriter.COMPLETE_CODE_TITLE,
))
complete_code_as_html = self._htmlify_code(self.buffer.getvalue(), "c/cpp")
outlist.append(u"<pre class='cython code'>{code}</pre>".format(code=complete_code_as_html))
outlist.append(u"</div></p>")
return outlist
_parse_code = re.compile((
br'(?P<refnanny>__Pyx_X?(?:GOT|GIVE)REF|__Pyx_RefNanny[A-Za-z]+)|'
br'(?P<trace>__Pyx_Trace[A-Za-z]+)|'
br'(?:'
br'(?P<pyx_macro_api>__Pyx_[A-Z][A-Z_]+)|'
br'(?P<pyx_c_api>(?:__Pyx_[A-Z][a-z_][A-Za-z_]*)|__pyx_convert_[A-Za-z_]*)|'
br'(?P<py_macro_api>Py[A-Z][a-z]+_[A-Z][A-Z_]+)|'
br'(?P<py_c_api>Py[A-Z][a-z]+_[A-Z][a-z][A-Za-z_]*)'
br')(?=\()|' # look-ahead to exclude subsequent '(' from replacement
br'(?P<error_goto>(?:(?<=;) *if [^;]* +)?__PYX_ERR\([^)]+\))'
).decode('ascii')).sub
_replace_pos_comment = re.compile(
# this matches what Cython generates as code line marker comment
br'^\s*/\*(?:(?:[^*]|\*[^/])*\n)+\s*\*/\s*\n'.decode('ascii'),
re.M
).sub
class AnnotationItem(object):
def __init__(self, style, text, tag="", size=0):
self.style = style
self.text = text
self.tag = tag
self.size = size
def start(self):
return u"<span class='cython tag %s' title='%s'>%s" % (self.style, self.text, self.tag)
def end(self):
return self.size, u"</span>"
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