Beladiaamy commited on
Commit
f30b579
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1 Parent(s): ab2cc2f

Update app.py

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Files changed (1) hide show
  1. app.py +6 -46
app.py CHANGED
@@ -1,43 +1,3 @@
1
- import pickle
2
- import pandas as pd
3
- import shap
4
- from shap.plots._force_matplotlib import draw_additive_plot
5
- import gradio as gr
6
- import numpy as np
7
- import matplotlib.pyplot as plt
8
-
9
- # load the model from disk
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- loaded_model = pickle.load(open("db_xgb.pkl", 'rb'))
11
-
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- # Setup SHAP
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- explainer = shap.Explainer(loaded_model) # PLEASE DO NOT CHANGE THIS.
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-
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- # Create the main function for server
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- def main_func(HighBP, HighChol, CholCheck, BMI, Smoker, Stroke, HeartDiseaseorAttack, PhysActivity, Fruits, Veggies, HvyAlcoholConsump, AnyHealthcare, NoDocbcCost, GenHlth, MentHlth, PhysHlth, DiffWalk, Sex, Age, Education, Income):
17
- new_row = pd.DataFrame.from_dict({'HighBP': HighBP, 'HighChol': HighChol, 'CholCheck': CholCheck, 'BMI': BMI, 'Smoker': Smoker, 'Stroke': Stroke, 'HeartDiseaseorAttack': HeartDiseaseorAttack, 'PhysActivity':PhysActivity, 'Fruits':Fruits, 'Veggies':Veggies, 'HvyAlcoholConsump': HvyAlcoholConsump, 'AnyHealthcare': AnyHealthcare, 'NoDocbcCost': NoDocbcCost, 'GenHlth': GenHlth, 'MentHlth': MentHlth, 'PhysHlth': PhysHlth, 'DiffWalk': DiffWalk, 'Sex': Sex, 'Age': Age, 'Education': Education, 'Income': Income},
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- orient = 'index').transpose()
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-
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- prob = loaded_model.predict_proba(new_row)
21
-
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- shap_values = explainer(new_row)
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- # plot = shap.force_plot(shap_values[0], matplotlib=True, figsize=(30,30), show=False)
24
- # plot = shap.plots.waterfall(shap_values[0], max_display=6, show=False)
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- plot = shap.plots.bar(shap_values[0], max_display=6, order=shap.Explanation.abs, show_data='auto', show=False)
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-
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- plt.tight_layout()
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- local_plot = plt.gcf()
29
- plt.close()
30
-
31
- return {"Low Chance": float(prob[0][0]), "High Chance": 1-float(prob[0][0])}, local_plot
32
-
33
- # Create the UI
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- title = "**Diabetes Predictor & Interpreter** 🪐"
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- description1 = """This app takes info from subjects and predicts their diabetes likelihood. Do not use for medical diagnosis."""
36
-
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- description2 = """
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- To use the app, click on one of the examples, or adjust the values of the factors, and click on Analyze. 🤞
39
- """
40
-
41
  with gr.Blocks(title=title) as demo:
42
  gr.Markdown(f"## {title}")
43
  gr.Markdown(description1)
@@ -45,10 +5,10 @@ with gr.Blocks(title=title) as demo:
45
  gr.Markdown(description2)
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  gr.Markdown("""---""")
47
 
48
- input_block_left() == gr.Column(
49
  HighBP = gr.Radio(label="Do you have high Blood Pressure?", choices=["No", "Yes"], default="Yes", description="0 = no high BP, 1 = high BP"),
50
  HighChol = gr.Radio(label="Do you have high Cholesterol?", choices=["No", "Yes"], default="Yes", description="0 = no high cholesterol, 1 = high cholesterol"),
51
- CholCheck = gr.Radio(label="Did you have a Cholestorol check in past 5 years?", choices=["No", "Yes"], default="Yes", description="No = not checked in 5 years, Yes = checked in 5 years"),
52
  BMI = gr.Number(label="BMI", minimum=0, maximum=98, default=1),
53
  Smoker = gr.Radio(label="Are you a smoker?", choices=["No", "Yes"], default="Yes", description="No = never smoked, Yes = smoked at least 100 cigarettes"),
54
  Stroke = gr.Radio(label="Have you had a stroke?", choices=["No", "Yes"], default="Yes", description="No = never had a stroke, Yes = had a stroke"),
@@ -60,8 +20,8 @@ with gr.Blocks(title=title) as demo:
60
  AnyHealthcare = gr.Radio(label="Do you have any kind of health care coverage? (e.g., health insurance, prepaid plans such as HMO)", choices=["No", "Yes"], default="Yes", description="No = no coverage, Yes = coverage"),
61
  NoDocbcCost = gr.Radio(label="Was there a time in the past 12 months when you needed to see a doctor but could not because of cost?", choices=["No", "Yes"], default="Yes", description="No = no barrier, Yes = cost barrier")
62
  )
63
-
64
- input_block_right == gr.Column(
65
  GenHlth = gr.Slider(label="In general, rank your health on a scale: 1(excellent)-5(poor)", minimum=1, maximum=5, default=1, step=1, description="1 = excellent, 5 = poor"),
66
  MentHlth = gr.Number(label="Poor Mental Health in the Past 30 Days", minimum=0, maximum=30, default=1, description="Days not good out of last 30"),
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  PhysHlth = gr.Number(label="Poor Physical Health in the Past 30 Days", minimum=0, maximum=30, default=1, description="Days not good out of last 30"),
@@ -72,9 +32,9 @@ with gr.Blocks(title=title) as demo:
72
  Income = gr.Dropdown(label="Income Level", choices=["< $10,000", "$10,000 - $24,999", "$25,000 - $49,999", "$50,000 - $74,999", "$75,000 or more"], default="< $10,000", description="Income level")
73
  )
74
 
75
- input_block == gr.Row([input_block_left, input_block_right])
76
 
77
- output_block == gr.Column(
78
  gr.Label(label="Predicted Label"),
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  gr.Plot(label="SHAP Plot")
80
  )
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
  with gr.Blocks(title=title) as demo:
2
  gr.Markdown(f"## {title}")
3
  gr.Markdown(description1)
 
5
  gr.Markdown(description2)
6
  gr.Markdown("""---""")
7
 
8
+ input_block_left = gr.Column(
9
  HighBP = gr.Radio(label="Do you have high Blood Pressure?", choices=["No", "Yes"], default="Yes", description="0 = no high BP, 1 = high BP"),
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  HighChol = gr.Radio(label="Do you have high Cholesterol?", choices=["No", "Yes"], default="Yes", description="0 = no high cholesterol, 1 = high cholesterol"),
11
+ CholCheck = gr.Radio(label="Did you have a Cholesterol check in past 5 years?", choices=["No", "Yes"], default="Yes", description="No = not checked in 5 years, Yes = checked in 5 years"),
12
  BMI = gr.Number(label="BMI", minimum=0, maximum=98, default=1),
13
  Smoker = gr.Radio(label="Are you a smoker?", choices=["No", "Yes"], default="Yes", description="No = never smoked, Yes = smoked at least 100 cigarettes"),
14
  Stroke = gr.Radio(label="Have you had a stroke?", choices=["No", "Yes"], default="Yes", description="No = never had a stroke, Yes = had a stroke"),
 
20
  AnyHealthcare = gr.Radio(label="Do you have any kind of health care coverage? (e.g., health insurance, prepaid plans such as HMO)", choices=["No", "Yes"], default="Yes", description="No = no coverage, Yes = coverage"),
21
  NoDocbcCost = gr.Radio(label="Was there a time in the past 12 months when you needed to see a doctor but could not because of cost?", choices=["No", "Yes"], default="Yes", description="No = no barrier, Yes = cost barrier")
22
  )
23
+
24
+ input_block_right = gr.Column(
25
  GenHlth = gr.Slider(label="In general, rank your health on a scale: 1(excellent)-5(poor)", minimum=1, maximum=5, default=1, step=1, description="1 = excellent, 5 = poor"),
26
  MentHlth = gr.Number(label="Poor Mental Health in the Past 30 Days", minimum=0, maximum=30, default=1, description="Days not good out of last 30"),
27
  PhysHlth = gr.Number(label="Poor Physical Health in the Past 30 Days", minimum=0, maximum=30, default=1, description="Days not good out of last 30"),
 
32
  Income = gr.Dropdown(label="Income Level", choices=["< $10,000", "$10,000 - $24,999", "$25,000 - $49,999", "$50,000 - $74,999", "$75,000 or more"], default="< $10,000", description="Income level")
33
  )
34
 
35
+ input_block = gr.Row([input_block_left, input_block_right])
36
 
37
+ output_block = gr.Column(
38
  gr.Label(label="Predicted Label"),
39
  gr.Plot(label="SHAP Plot")
40
  )