diffusion_brain / models /ddpm_v2_conditioned.py
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from functools import partial
from inspect import isfunction
import numpy as np
import torch
import torch.nn as nn
import torch.nn.functional as F
from tqdm import tqdm
from models.unet_v2_conditioned import UNetModel
def exists(x):
return x is not None
def default(val, d):
if exists(val):
return val
return d() if isfunction(d) else d
def noise_like(shape, device, repeat=False):
repeat_noise = lambda: torch.randn((1, *shape[1:]), device=device).repeat(shape[0], *((1,) * (len(shape) - 1)))
noise = lambda: torch.randn(shape, device=device)
return repeat_noise() if repeat else noise()
def extract(a, t, x_shape):
b, *_ = t.shape
out = a.gather(-1, t)
return out.reshape(b, *((1,) * (len(x_shape) - 1)))
def make_beta_schedule(schedule, n_timestep, linear_start=1e-4, linear_end=2e-2, cosine_s=8e-3):
if schedule == "linear":
betas = (
torch.linspace(linear_start ** 0.5, linear_end ** 0.5, n_timestep, dtype=torch.float64) ** 2
)
elif schedule == "cosine":
timesteps = (
torch.arange(n_timestep + 1, dtype=torch.float64) / n_timestep + cosine_s
)
alphas = timesteps / (1 + cosine_s) * np.pi / 2
alphas = torch.cos(alphas).pow(2)
alphas = alphas / alphas[0]
betas = 1 - alphas[1:] / alphas[:-1]
betas = np.clip(betas, a_min=0, a_max=0.999)
elif schedule == "sqrt_linear":
betas = torch.linspace(linear_start, linear_end, n_timestep, dtype=torch.float64)
elif schedule == "sqrt":
betas = torch.linspace(linear_start, linear_end, n_timestep, dtype=torch.float64) ** 0.5
else:
raise ValueError(f"schedule '{schedule}' unknown.")
return betas.numpy()
class DDPM(nn.Module):
def __init__(
self,
unet_config,
timesteps: int = 1000,
beta_schedule="linear",
loss_type="l2",
log_every_t=100,
clip_denoised=False,
linear_start=1e-4,
linear_end=2e-2,
cosine_s=8e-3,
original_elbo_weight=0.,
v_posterior=0., # weight for choosing posterior variance as sigma = (1-v) * beta_tilde + v * beta
l_simple_weight=1.,
parameterization="eps", # all assuming fixed variance schedules
learn_logvar=False,
logvar_init=0.,
conditioning_key=None,
):
super().__init__()
assert parameterization in ["eps", "x0"], 'currently only supporting "eps" and "x0"'
self.parameterization = parameterization
if conditioning_key == "unconditioned":
conditioning_key = None
self.conditioning_key = conditioning_key
self.model = DiffusionWrapper(unet_config, conditioning_key)
self.clip_denoised = clip_denoised
self.log_every_t = log_every_t
self.v_posterior = v_posterior
self.original_elbo_weight = original_elbo_weight
self.l_simple_weight = l_simple_weight
self.loss_type = loss_type
self.register_schedule(
beta_schedule=beta_schedule,
timesteps=timesteps,
linear_start=linear_start,
linear_end=linear_end,
cosine_s=cosine_s,
)
self.learn_logvar = learn_logvar
self.logvar = torch.full(fill_value=logvar_init, size=(self.num_timesteps,))
if self.learn_logvar:
self.logvar = nn.Parameter(self.logvar, requires_grad=True)
def register_schedule(
self,
beta_schedule="linear",
timesteps=1000,
linear_start=1e-4,
linear_end=2e-2,
cosine_s=8e-3
):
betas = make_beta_schedule(beta_schedule, timesteps, linear_start=linear_start, linear_end=linear_end,
cosine_s=cosine_s)
alphas = 1. - betas
alphas_cumprod = np.cumprod(alphas, axis=0)
alphas_cumprod_prev = np.append(1., alphas_cumprod[:-1])
timesteps, = betas.shape
self.num_timesteps = int(timesteps)
self.linear_start = linear_start
self.linear_end = linear_end
to_torch = partial(torch.tensor, dtype=torch.float32)
self.register_buffer('betas', to_torch(betas))
self.register_buffer('alphas_cumprod', to_torch(alphas_cumprod))
self.register_buffer('alphas_cumprod_prev', to_torch(alphas_cumprod_prev))
# calculations for diffusion q(x_t | x_{t-1}) and others
self.register_buffer('sqrt_alphas_cumprod', to_torch(np.sqrt(alphas_cumprod)))
self.register_buffer('sqrt_one_minus_alphas_cumprod', to_torch(np.sqrt(1. - alphas_cumprod)))
self.register_buffer('log_one_minus_alphas_cumprod', to_torch(np.log(1. - alphas_cumprod)))
self.register_buffer('sqrt_recip_alphas_cumprod', to_torch(np.sqrt(1. / alphas_cumprod)))
self.register_buffer('sqrt_recipm1_alphas_cumprod', to_torch(np.sqrt(1. / alphas_cumprod - 1)))
# calculations for posterior q(x_{t-1} | x_t, x_0)
posterior_variance = (1 - self.v_posterior) * betas * (1. - alphas_cumprod_prev) / (
1. - alphas_cumprod) + self.v_posterior * betas
# above: equal to 1. / (1. / (1. - alpha_cumprod_tm1) + alpha_t / beta_t)
self.register_buffer('posterior_variance', to_torch(posterior_variance))
# below: log calculation clipped because the posterior variance is 0 at the beginning of the diffusion chain
self.register_buffer('posterior_log_variance_clipped', to_torch(np.log(np.maximum(posterior_variance, 1e-20))))
self.register_buffer('posterior_mean_coef1', to_torch(
betas * np.sqrt(alphas_cumprod_prev) / (1. - alphas_cumprod)))
self.register_buffer('posterior_mean_coef2', to_torch(
(1. - alphas_cumprod_prev) * np.sqrt(alphas) / (1. - alphas_cumprod)))
if self.parameterization == "eps":
lvlb_weights = self.betas ** 2 / (
2 * self.posterior_variance * to_torch(alphas) * (1 - self.alphas_cumprod))
elif self.parameterization == "x0":
lvlb_weights = 0.5 * np.sqrt(torch.Tensor(alphas_cumprod)) / (2. * 1 - torch.Tensor(alphas_cumprod))
else:
raise NotImplementedError("mu not supported")
# TODO how to choose this term
lvlb_weights[0] = lvlb_weights[1]
self.register_buffer('lvlb_weights', lvlb_weights, persistent=False)
assert not torch.isnan(self.lvlb_weights).all()
def q_mean_variance(self, x_start, t):
"""
Get the distribution q(x_t | x_0).
:param x_start: the [N x C x ...] tensor of noiseless inputs.
:param t: the number of diffusion steps (minus 1). Here, 0 means one step.
:return: A tuple (mean, variance, log_variance), all of x_start's shape.
"""
mean = extract(self.sqrt_alphas_cumprod, t, x_start.shape) * x_start
variance = extract(1.0 - self.alphas_cumprod, t, x_start.shape)
log_variance = extract(self.log_one_minus_alphas_cumprod, t, x_start.shape)
return mean, variance, log_variance
def predict_start_from_noise(self, x_t, t, noise):
return (
extract(self.sqrt_recip_alphas_cumprod, t, x_t.shape) * x_t -
extract(self.sqrt_recipm1_alphas_cumprod, t, x_t.shape) * noise
)
def q_posterior(self, x_start, x_t, t):
"""
Compute the mean and variance of the diffusion posterior:
q(x_{t-1} | x_t, x_0)
"""
posterior_mean = (
extract(self.posterior_mean_coef1, t, x_t.shape) * x_start +
extract(self.posterior_mean_coef2, t, x_t.shape) * x_t
)
posterior_variance = extract(self.posterior_variance, t, x_t.shape)
posterior_log_variance_clipped = extract(self.posterior_log_variance_clipped, t, x_t.shape)
return posterior_mean, posterior_variance, posterior_log_variance_clipped
def p_mean_variance(self, x, c, t, clip_denoised: bool, return_x0=False):
"""
Apply the model to get p(x_{t-1} | x_t)
:param model: the model, which takes a signal and a batch of timesteps
as input.
:param x: the [N x C x ...] tensor at time t.
:param t: a 1-D Tensor of timesteps.
:param clip_denoised: if True, clip the denoised signal into [-1, 1].
"""
t_in = t
model_out = self.apply_model(x, t_in, c)
if self.parameterization == "eps":
x_recon = self.predict_start_from_noise(x, t=t, noise=model_out)
elif self.parameterization == "x0":
x_recon = model_out
if clip_denoised:
x_recon.clamp_(-1., 1.)
model_mean, posterior_variance, posterior_log_variance = self.q_posterior(x_start=x_recon, x_t=x, t=t)
if return_x0:
return model_mean, posterior_variance, posterior_log_variance, x_recon
else:
return model_mean, posterior_variance, posterior_log_variance
@torch.no_grad()
def p_sample(
self,
x,
c,
t,
clip_denoised=True,
repeat_noise=False,
return_x0=False,
temperature=1.,
noise_dropout=0.,
):
"""
Sample x_{t-1} from the model at the given timestep.
:param x: the current tensor at x_{t-1}.
:param t: the value of t, starting at 0 for the first diffusion step.
:param clip_denoised: if True, clip the x_start prediction to [-1, 1].
"""
b, *_, device = *x.shape, x.device
outputs = self.p_mean_variance(
x=x,
c=c,
t=t,
clip_denoised=clip_denoised,
return_x0=return_x0,
)
if return_x0:
model_mean, _, model_log_variance, x0 = outputs
else:
model_mean, _, model_log_variance = outputs
noise = noise_like(x.shape, device, repeat_noise) * temperature
if noise_dropout > 0.:
noise = torch.nn.functional.dropout(noise, p=noise_dropout)
# no noise when t == 0
nonzero_mask = (1 - (t == 0).float()).reshape(b, *((1,) * (len(x.shape) - 1)))
if return_x0:
return model_mean + nonzero_mask * (0.5 * model_log_variance).exp() * noise, x0
else:
return model_mean + nonzero_mask * (0.5 * model_log_variance).exp() * noise
@torch.no_grad()
def p_sample_loop(self, cond, shape, return_intermediates=False):
device = self.betas.device
b = shape[0]
img = torch.randn(shape, device=device)
intermediates = [img]
for i in tqdm(reversed(range(0, self.num_timesteps)), desc='sampling loop time step', total=self.num_timesteps):
img = self.p_sample(img, cond, torch.full((b,), i, device=device, dtype=torch.long),
clip_denoised=self.clip_denoised)
if i % self.log_every_t == 0 or i == self.num_timesteps - 1:
intermediates.append(img)
if return_intermediates:
return img, intermediates
return img
@torch.no_grad()
def sample(self, batch_size=16, return_intermediates=False):
image_size = self.image_size
channels = self.channels
return self.p_sample_loop((batch_size, channels, image_size, image_size),
return_intermediates=return_intermediates)
def q_sample(self, x_start, t, noise=None):
"""
Diffuse the data for a given number of diffusion steps.
In other words, sample from q(x_t | x_0).
:param x_start: the initial data batch.
:param t: the number of diffusion steps (minus 1). Here, 0 means one step.
:param noise: if specified, the split-out normal noise.
:return: A noisy version of x_start.
"""
noise = default(noise, lambda: torch.randn_like(x_start))
return (
extract(self.sqrt_alphas_cumprod, t, x_start.shape) * x_start +
extract(self.sqrt_one_minus_alphas_cumprod, t, x_start.shape) * noise
)
def get_loss(self, pred, target, mean=True):
if self.loss_type == 'l1':
loss = (target - pred).abs()
if mean:
loss = loss.mean()
elif self.loss_type == 'l2':
if mean:
loss = torch.nn.functional.mse_loss(target, pred)
else:
loss = torch.nn.functional.mse_loss(target, pred, reduction='none')
else:
raise NotImplementedError("unknown loss type '{loss_type}'")
return loss
def p_losses(self, x_start, cond, t, noise=None):
noise = default(noise, lambda: torch.randn_like(x_start))
x_noisy = self.q_sample(x_start=x_start, t=t, noise=noise)
model_output = self.apply_model(x_noisy, t, cond)
loss_dict = {}
if self.parameterization == "eps":
target = noise
elif self.parameterization == "x0":
target = x_start
else:
raise NotImplementedError(f"Paramterization {self.parameterization} not yet supported")
loss_simple = self.get_loss(model_output, target, mean=False).mean(dim=[1, 2, 3, 4])
loss_dict.update({f'loss_simple': loss_simple.mean()})
logvar_t = self.logvar[t].to(x_start.device)
loss = loss_simple / torch.exp(logvar_t) + logvar_t
# loss = loss_simple / torch.exp(self.logvar) + self.logvar
if self.learn_logvar:
loss_dict.update({f'loss_gamma': loss.mean()})
loss_dict.update({'logvar': self.logvar.data.mean()})
loss = self.l_simple_weight * loss.mean()
loss_vlb = self.get_loss(model_output, target, mean=False).mean(dim=(1, 2, 3, 4))
loss_vlb = (self.lvlb_weights[t] * loss_vlb).mean()
loss_dict.update({f'loss_vlb': loss_vlb})
loss += (self.original_elbo_weight * loss_vlb)
loss_dict.update({f'loss': loss})
return loss, loss_dict
def forward(self, x, c, *args, **kwargs):
t = torch.randint(0, self.num_timesteps, (x.shape[0],), device=x.device).long()
return self.p_losses(x, c, t, *args, **kwargs)
def configure_optimizers(self):
lr = self.learning_rate
params = list(self.model.parameters())
if self.learn_logvar:
print('Diffusion model optimizing logvar')
params.append(self.logvar)
opt = torch.optim.AdamW(params, lr=lr)
return opt
def apply_model(self, x_noisy, t, cond, return_ids=False):
if isinstance(cond, dict):
# hybrid case, cond is exptected to be a dict
pass
else:
if not isinstance(cond, list):
cond = [cond]
key = 'c_concat' if self.model.conditioning_key == 'concat' else 'c_crossattn'
cond = {key: cond}
x_recon = self.model(x_noisy, t, **cond)
if isinstance(x_recon, tuple) and not return_ids:
return x_recon[0]
else:
return x_recon
class DiffusionWrapper(nn.Module):
def __init__(self, unet_config, conditioning_key):
super().__init__()
self.diffusion_model = UNetModel(
**unet_config.get("params", dict())
)
self.conditioning_key = conditioning_key
def forward(self, x, t, c_concat: list = None, c_crossattn: list = None):
xc = torch.cat([x] + c_concat, dim=1)
cc = torch.cat(c_crossattn, 1)
out = self.diffusion_model(xc, t, context=cc)
return out