app.py

from langchain.embeddings.openai import OpenAIEmbeddings
from langchain.document_loaders import PyMuPDFLoader
from langchain.text_splitter import RecursiveCharacterTextSplitter
from langchain.vectorstores import Chroma
from langchain.chains import RetrievalQAWithSourcesChain
from langchain.chat_models import ChatOpenAI
from langchain.prompts.chat import (
    ChatPromptTemplate,
    SystemMessagePromptTemplate,
    HumanMessagePromptTemplate,
)
import os
import arxiv
import chainlit as cl
from chainlit import user_session

@cl.langchain_factory(use_async=True)
async def init():
    arxiv_query = None

    # Wait for the user to ask an Arxiv question
    while arxiv_query == None:
        arxiv_query = await cl.AskUserMessage(
            content="Please enter a topic to begin!", timeout=15
        ).send()

    # Obtain the top 3 results from Arxiv for the query
    search = arxiv.Search(
        query=arxiv_query["content"],
        max_results=3,
        sort_by=arxiv.SortCriterion.Relevance,
    )

    await cl.Message(content="Downloading and chunking articles...").send()
    # download each of the pdfs
    pdf_data = []
    for result in search.results():
        loader = PyMuPDFLoader(result.pdf_url)
        loaded_pdf = loader.load()

        for document in loaded_pdf:
            document.metadata["source"] = result.entry_id
            document.metadata["file_path"] = result.pdf_url
            document.metadata["title"] = result.title
            pdf_data.append(document)

    # Create a Chroma vector store
    embeddings = OpenAIEmbeddings(
        disallowed_special=(),
    )
    
    # If operation takes too long, make_async allows to run in a thread
    # docsearch = await cl.make_async(Chroma.from_documents)(pdf_data, embeddings) 
    docsearch = Chroma.from_documents(pdf_data, embeddings)

    # Create a chain that uses the Chroma vector store
    chain = RetrievalQAWithSourcesChain.from_chain_type(
        ChatOpenAI(
            model_name="gpt-3.5-turbo-16k",
            temperature=0,
        ),
        chain_type="stuff",
        retriever=docsearch.as_retriever(),
        return_source_documents=True,
    )

    # Let the user know that the system is ready
    await cl.Message(
        content=f"We found a few papers about `{arxiv_query['content']}` you can now ask questions!"
    ).send()

    return chain


@cl.langchain_postprocess
async def process_response(res):
    answer = res["answer"]
    source_elements_dict = {}
    source_elements = []
    for idx, source in enumerate(res["source_documents"]):
        title = source.metadata["title"]

        if title not in source_elements_dict:
            source_elements_dict[title] = {
                "page_number": [source.metadata["page"]],
                "url": source.metadata["file_path"],
            }

        else:
            source_elements_dict[title]["page_number"].append(source.metadata["page"])

        # sort the page numbers
        source_elements_dict[title]["page_number"].sort()

    for title, source in source_elements_dict.items():
        # create a string for the page numbers
        page_numbers = ", ".join([str(x) for x in source["page_number"]])
        text_for_source = f"Page Number(s): {page_numbers}\nURL: {source['url']}"
        source_elements.append(
            cl.Text(name=title, content=text_for_source, display="inline")
        )

    await cl.Message(content=answer, elements=source_elements).send()