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Merge pull request #48 from raidionics/zenodo

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  1. README.md +19 -1
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@@ -17,6 +17,8 @@ app_file: demo/app.py
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  [![license](https://img.shields.io/github/license/DAVFoundation/captain-n3m0.svg?style=flat-square)](https://github.com/DAVFoundation/captain-n3m0/blob/master/LICENSE)
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  [![CI/CD](https://github.com/raidionics/AeroPath/actions/workflows/deploy.yml/badge.svg)](https://github.com/raidionics/AeroPath/actions/workflows/deploy.yml)
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  <a target="_blank" href="https://huggingface.co/spaces/andreped/AeroPath"><img src="https://img.shields.io/badge/🤗%20Hugging%20Face-Spaces-yellow.svg"></a>
 
 
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  **AeroPath** was developed by SINTEF Medical Image Analysis to accelerate medical AI research.
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@@ -26,7 +28,7 @@ app_file: demo/app.py
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  This repository contains the AeroPath dataset described in ["_AeroPath: An airway segmentation benchmark dataset with challenging pathology_"](https://arxiv.org/abs/2311.01138). A web application was also developed in the study, to enable users to easily test our deep learning model on their own data. The application was developed using [Gradio](https://www.gradio.app) for the frontend and the segmentation is performed using the [Raidionics](https://raidionics.github.io/) backend.
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- The dataset can be accessed [here](https://zenodo.org/records/10069289).
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  ## [Dataset structure](https://github.com/raidionics/AeroPath#data-structure)
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@@ -104,6 +106,22 @@ If you found the dataset and/or web application relevant in your research, pleas
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  }
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  ```
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  The web application is using the [Raidionics]() backend, thus, also consider citing:
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  ```
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  @article{bouget2023raidionics,
 
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  [![license](https://img.shields.io/github/license/DAVFoundation/captain-n3m0.svg?style=flat-square)](https://github.com/DAVFoundation/captain-n3m0/blob/master/LICENSE)
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  [![CI/CD](https://github.com/raidionics/AeroPath/actions/workflows/deploy.yml/badge.svg)](https://github.com/raidionics/AeroPath/actions/workflows/deploy.yml)
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  <a target="_blank" href="https://huggingface.co/spaces/andreped/AeroPath"><img src="https://img.shields.io/badge/🤗%20Hugging%20Face-Spaces-yellow.svg"></a>
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+ [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.10069288.svg)](https://doi.org/10.5281/zenodo.10069288)
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+ [![paper](https://img.shields.io/badge/arXiv-preprint-D12424)]([arXiv](https://arxiv.org/abs/2311.01138))
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  **AeroPath** was developed by SINTEF Medical Image Analysis to accelerate medical AI research.
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  This repository contains the AeroPath dataset described in ["_AeroPath: An airway segmentation benchmark dataset with challenging pathology_"](https://arxiv.org/abs/2311.01138). A web application was also developed in the study, to enable users to easily test our deep learning model on their own data. The application was developed using [Gradio](https://www.gradio.app) for the frontend and the segmentation is performed using the [Raidionics](https://raidionics.github.io/) backend.
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+ The dataset is made openly available at Zenodo [here](https://zenodo.org/records/10069289).
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  ## [Dataset structure](https://github.com/raidionics/AeroPath#data-structure)
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  }
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  ```
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+ The dataset is hosted at Zenodo, so you should also cite the following:
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+ ```
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+ @dataset{hofstad_2023_10069289,
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+ author = {Hofstad, Erlend and
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+ Bouget, David and
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+ Pedersen, André},
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+ title = {{AeroPath: An airway segmentation benchmark dataset
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+ with challenging pathology}},
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+ month = nov,
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+ year = 2023,
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+ publisher = {Zenodo},
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+ doi = {10.5281/zenodo.10069289},
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+ url = {https://doi.org/10.5281/zenodo.10069289}
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+ }
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+ ```
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+
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  The web application is using the [Raidionics]() backend, thus, also consider citing:
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  ```
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  @article{bouget2023raidionics,