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Running
on
Zero
Anton Bushuiev
commited on
Commit
·
1c84dba
1
Parent(s):
98b3032
Improve ddG format
Browse files- app.py +3 -1
- requirements.txt +1 -1
app.py
CHANGED
@@ -6,6 +6,7 @@ from functools import partial
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import gradio as gr
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import torch
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from Bio.PDB.Polypeptide import protein_letters_3to1
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from biopandas.pdb import PandasPdb
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from colour import Color
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@@ -225,6 +226,7 @@ def predict(models, temp_dir, *inputs):
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# Create dataframe
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ddg = ddg.detach().numpy().tolist()
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df = list(zip(muts, ddg))
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# Create 3DMol plot
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@@ -284,7 +286,7 @@ with app:
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# Output GUI
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gr.Markdown("## Predictions")
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df = gr.Dataframe(
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-
headers=["Mutation", "ddG"],
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datatype=["str", "number"],
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col_count=(2, "fixed"),
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)
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import gradio as gr
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import torch
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import numpy as np
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from Bio.PDB.Polypeptide import protein_letters_3to1
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from biopandas.pdb import PandasPdb
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from colour import Color
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# Create dataframe
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ddg = ddg.detach().numpy().tolist()
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ddg = np.round(ddg, 3)
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df = list(zip(muts, ddg))
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# Create 3DMol plot
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# Output GUI
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gr.Markdown("## Predictions")
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df = gr.Dataframe(
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headers=["Mutation", "ddG [kcal/mol]"],
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datatype=["str", "number"],
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col_count=(2, "fixed"),
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)
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requirements.txt
CHANGED
@@ -1,2 +1,2 @@
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ppiformer @ git+https://github.com/anton-bushuiev/ppiformer.git@main
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-
gradio
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ppiformer @ git+https://github.com/anton-bushuiev/ppiformer.git@main
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gradio==4.17.0
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