Spaces:
Running
on
Zero
Running
on
Zero
Anton Bushuiev
commited on
Commit
·
470975c
1
Parent(s):
5b962d1
wrap whole predict into spaces.GPU
Browse files
app.py
CHANGED
@@ -45,7 +45,8 @@ from ppiref.utils.ppi import PPIPath
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from ppiref.utils.residue import Residue
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from ppiformer.tasks.node import DDGPPIformer
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from ppiformer.utils.api import download_weights
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from ppiformer.utils.api import predict_ddg as predict_ddg_
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from ppiformer.utils.torch import fill_diagonal
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from ppiformer.definitions import PPIFORMER_WEIGHTS_DIR
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@@ -59,14 +60,14 @@ logging.basicConfig(
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random.seed(0)
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@spaces.GPU
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def predict_ddg(models, ppi, muts, return_attn):
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def process_inputs(inputs, temp_dir):
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@@ -287,6 +288,7 @@ def plot_3dmol(pdb_path, ppi_path, mut, attn, attn_mut_id=0):
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allowpaymentrequest="" frameborder="0" srcdoc='{html}'></iframe>"""
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def predict(models, temp_dir, *inputs):
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logging.info('Starting prediction')
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from ppiref.utils.residue import Residue
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from ppiformer.tasks.node import DDGPPIformer
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from ppiformer.utils.api import download_weights
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# from ppiformer.utils.api import predict_ddg as predict_ddg_
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from ppiformer.utils.api import predict_ddg
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from ppiformer.utils.torch import fill_diagonal
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from ppiformer.definitions import PPIFORMER_WEIGHTS_DIR
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random.seed(0)
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# @spaces.GPU
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# def predict_ddg(models, ppi, muts, return_attn):
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# if return_attn:
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# ddg_pred, attns = predict_ddg_(models, ppi, muts, return_attn=return_attn)
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# return ddg_pred.detach().cpu(), attns.detach().cpu()
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# else:
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# ddg_pred = predict_ddg_(models, ppi, muts, return_attn=return_attn)
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# return ddg_pred.detach().cpu()
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def process_inputs(inputs, temp_dir):
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allowpaymentrequest="" frameborder="0" srcdoc='{html}'></iframe>"""
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@spaces.GPU
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def predict(models, temp_dir, *inputs):
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logging.info('Starting prediction')
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