Update requirements.txt

requirements.txt

@@ -1,328 +1,19 @@
-channels:
-  - conda-forge
-  - bioconda
-dependencies:
-  - _libgcc_mutex=0.1=conda_forge
-  - _openmp_mutex=4.5=2_gnu
-  - aiofiles=22.1.0=pyhd8ed1ab_0
-  - aiohttp=3.7.4.post0=py39h3811e60_1
-  - aiosqlite=0.18.0=pyhd8ed1ab_0
-  - altair=4.2.2=pyhd8ed1ab_0
-  - anyio=3.6.2=pyhd8ed1ab_0
-  - aom=3.5.0=h27087fc_0
-  - argon2-cffi=21.3.0=pyhd8ed1ab_0
-  - argon2-cffi-bindings=21.2.0=py39hb9d737c_3
-  - asttokens=2.2.1=pyhd8ed1ab_0
-  - async-timeout=3.0.1=py_1000
-  - attrs=22.2.0=pyh71513ae_0
-  - aws-c-auth=0.7.0=hf8751d9_2
-  - aws-c-cal=0.6.0=h93469e0_0
-  - aws-c-common=0.8.23=hd590300_0
-  - aws-c-compression=0.2.17=h862ab75_1
-  - aws-c-event-stream=0.3.1=h9599702_1
-  - aws-c-http=0.7.11=hbe98c3e_0
-  - aws-c-io=0.13.28=h3870b5a_0
-  - aws-c-mqtt=0.8.14=h2e270ba_2
-  - aws-c-s3=0.3.13=heb0bb06_2
-  - aws-c-sdkutils=0.1.11=h862ab75_1
-  - aws-checksums=0.1.16=h862ab75_1
-  - aws-crt-cpp=0.20.3=he9c0e7f_4
-  - aws-sdk-cpp=1.10.57=hbc2ea52_17
-  - babel=2.12.1=pyhd8ed1ab_1
-  - backcall=0.2.0=pyh9f0ad1d_0
-  - backports=1.0=pyhd8ed1ab_3
-  - backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
-  - beautifulsoup4=4.12.2=pyha770c72_0
-  - biopython=1.81=py39h72bdee0_0
-  - bleach=6.0.0=pyhd8ed1ab_0
-  - brotli=1.0.9=h166bdaf_8
-  - brotli-bin=1.0.9=h166bdaf_8
-  - brotlipy=0.7.0=py39hb9d737c_1005
-  - bzip2=1.0.8=h7f98852_4
-  - c-ares=1.19.1=hd590300_0
-  - ca-certificates=2023.5.7=hbcca054_0
-  - certifi=2023.5.7=pyhd8ed1ab_0
-  - cffi=1.15.1=py39he91dace_3
-  - chardet=4.0.0=py39hf3d152e_3
-  - charset-normalizer=3.1.0=pyhd8ed1ab_0
-  - click=8.1.3=unix_pyhd8ed1ab_2
-  - colorama=0.4.6=pyhd8ed1ab_0
-  - comm=0.1.3=pyhd8ed1ab_0
-  - contourpy=1.0.7=py39h4b4f3f3_0
-  - cryptography=40.0.2=py39h079d5ae_0
-  - cycler=0.11.0=pyhd8ed1ab_0
-  - dataclasses=0.8=pyhc8e2a94_3
-  - datasets=2.13.1=pyhd8ed1ab_0
-  - debugpy=1.6.7=py39h227be39_0
-  - decorator=5.1.1=pyhd8ed1ab_0
-  - defusedxml=0.7.1=pyhd8ed1ab_0
-  - dill=0.3.6=pyhd8ed1ab_1
-  - entrypoints=0.4=pyhd8ed1ab_0
-  - executing=1.2.0=pyhd8ed1ab_0
-  - expat=2.5.0=hcb278e6_1
-  - fastapi=0.95.1=pyhd8ed1ab_0
-  - ffmpeg=5.1.2=gpl_h8dda1f0_106
-  - ffmpy=0.3.0=pyhb6f538c_0
-  - filelock=3.12.0=pyhd8ed1ab_0
-  - flit-core=3.8.0=pyhd8ed1ab_0
-  - font-ttf-dejavu-sans-mono=2.37=hab24e00_0
-  - font-ttf-inconsolata=3.000=h77eed37_0
-  - font-ttf-source-code-pro=2.038=h77eed37_0
-  - font-ttf-ubuntu=0.83=hab24e00_0
-  - fontconfig=2.14.2=h14ed4e7_0
-  - fonts-conda-ecosystem=1=0
-  - fonts-conda-forge=1=0
-  - fonttools=4.39.3=py39h72bdee0_0
-  - freetype=2.12.1=hca18f0e_1
-  - fsspec=2023.4.0=pyh1a96a4e_0
-  - gflags=2.2.2=he1b5a44_1004
-  - glog=0.6.0=h6f12383_0
-  - gmp=6.2.1=h58526e2_0
-  - gnutls=3.7.8=hf3e180e_0
-  - gradio=3.23.0=pyhd8ed1ab_0
-  - h11=0.14.0=pyhd8ed1ab_0
-  - h2=4.1.0=pyhd8ed1ab_0
-  - hpack=4.0.0=pyh9f0ad1d_0
-  - httpcore=0.17.0=pyhd8ed1ab_0
-  - httpx=0.24.0=pyhd8ed1ab_1
-  - huggingface_hub=0.16.4=pyhd8ed1ab_0
-  - hyperframe=6.0.1=pyhd8ed1ab_0
-  - icu=72.1=hcb278e6_0
-  - idna=3.4=pyhd8ed1ab_0
-  - importlib-metadata=6.5.0=pyha770c72_0
-  - importlib-resources=5.12.0=pyhd8ed1ab_0
-  - importlib_metadata=6.5.0=hd8ed1ab_0
-  - importlib_resources=5.12.0=pyhd8ed1ab_0
-  - ipykernel=6.22.0=pyh210e3f2_0
-  - ipython=8.12.0=pyh41d4057_0
-  - ipython_genutils=0.2.0=py_1
-  - jedi=0.18.2=pyhd8ed1ab_0
-  - jinja2=3.1.2=pyhd8ed1ab_1
-  - json5=0.9.5=pyh9f0ad1d_0
-  - jsonschema=4.17.3=pyhd8ed1ab_0
-  - jupyter_client=8.2.0=pyhd8ed1ab_0
-  - jupyter_core=5.3.0=py39hf3d152e_0
-  - jupyter_events=0.6.3=pyhd8ed1ab_0
-  - jupyter_server=2.5.0=pyhd8ed1ab_0
-  - jupyter_server_fileid=0.9.0=pyhd8ed1ab_0
-  - jupyter_server_terminals=0.4.4=pyhd8ed1ab_1
-  - jupyter_server_ydoc=0.8.0=pyhd8ed1ab_0
-  - jupyter_ydoc=0.2.3=pyhd8ed1ab_0
-  - jupyterlab=3.6.3=pyhd8ed1ab_0
-  - jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
-  - jupyterlab_server=2.22.1=pyhd8ed1ab_0
-  - keyutils=1.6.1=h166bdaf_0
-  - kiwisolver=1.4.4=py39hf939315_1
-  - krb5=1.21.1=h659d440_0
-  - lame=3.100=h166bdaf_1003
-  - lcms2=2.15=haa2dc70_1
-  - ld_impl_linux-64=2.40=h41732ed_0
-  - lerc=4.0.0=h27087fc_0
-  - libabseil=20230125.3=cxx17_h59595ed_0
-  - libarrow=12.0.1=h657c46f_5_cpu
-  - libblas=3.9.0=16_linux64_openblas
-  - libbrotlicommon=1.0.9=h166bdaf_8
-  - libbrotlidec=1.0.9=h166bdaf_8
-  - libbrotlienc=1.0.9=h166bdaf_8
-  - libcblas=3.9.0=16_linux64_openblas
-  - libcrc32c=1.1.2=h9c3ff4c_0
-  - libcurl=8.2.0=hca28451_0
-  - libdeflate=1.18=h0b41bf4_0
-  - libdrm=2.4.114=h166bdaf_0
-  - libedit=3.1.20191231=he28a2e2_2
-  - libev=4.33=h516909a_1
-  - libevent=2.1.12=hf998b51_1
-  - libexpat=2.5.0=hcb278e6_1
-  - libffi=3.4.2=h7f98852_5
-  - libgcc-ng=12.2.0=h65d4601_19
-  - libgfortran-ng=12.2.0=h69a702a_19
-  - libgfortran5=12.2.0=h337968e_19
-  - libgomp=12.2.0=h65d4601_19
-  - libgoogle-cloud=2.12.0=h840a212_1
-  - libgrpc=1.56.2=h3905398_0
-  - libiconv=1.17=h166bdaf_0
-  - libidn2=2.1.0=h470a237_0
-  - libjpeg-turbo=2.1.5.1=h0b41bf4_0
-  - liblapack=3.9.0=16_linux64_openblas
-  - libnghttp2=1.52.0=h61bc06f_0
-  - libnsl=2.0.0=h7f98852_0
-  - libnuma=2.0.16=h0b41bf4_1
-  - libopenblas=0.3.21=pthreads_h78a6416_3
-  - libopus=1.3.1=h7f98852_1
-  - libpciaccess=0.17=h166bdaf_0
-  - libpng=1.6.39=h753d276_0
-  - libprotobuf=4.23.3=hd1fb520_0
-  - libsodium=1.0.18=h36c2ea0_1
-  - libsqlite=3.40.0=h753d276_0
-  - libssh2=1.11.0=h0841786_0
-  - libstdcxx-ng=12.2.0=h46fd767_19
-  - libtasn1=4.19.0=h166bdaf_0
-  - libthrift=0.18.1=h8fd135c_2
-  - libtiff=4.5.0=ha587672_6
-  - libutf8proc=2.8.0=h166bdaf_0
-  - libuuid=2.38.1=h0b41bf4_0
-  - libva=2.18.0=h0b41bf4_0
-  - libvpx=1.11.0=h9c3ff4c_3
-  - libwebp-base=1.3.0=h0b41bf4_0
-  - libxcb=1.13=h7f98852_1004
-  - libxml2=2.10.4=hfdac1af_0
-  - libzlib=1.2.13=h166bdaf_4
-  - linkify-it-py=2.0.0=pyhd8ed1ab_0
-  - lz4-c=1.9.4=hcb278e6_0
-  - markdown-it-py=2.2.0=pyhd8ed1ab_0
-  - markupsafe=2.1.2=py39h72bdee0_0
-  - matplotlib-base=3.7.1=py39he190548_0
-  - matplotlib-inline=0.1.6=pyhd8ed1ab_0
-  - mdit-py-plugins=0.3.3=pyhd8ed1ab_0
-  - mdurl=0.1.0=pyhd8ed1ab_0
-  - mistune=2.0.5=pyhd8ed1ab_0
-  - multidict=6.0.4=py39h72bdee0_0
-  - multiprocess=0.70.14=py39hb9d737c_3
-  - munkres=1.1.4=pyh9f0ad1d_0
-  - nbclassic=0.5.5=pyhb4ecaf3_1
-  - nbclient=0.7.3=pyhd8ed1ab_0
-  - nbconvert=7.3.1=pyhd8ed1ab_0
-  - nbconvert-core=7.3.1=pyhd8ed1ab_0
-  - nbconvert-pandoc=7.3.1=pyhd8ed1ab_0
-  - nbformat=5.8.0=pyhd8ed1ab_0
-  - ncurses=6.3=h27087fc_1
-  - nest-asyncio=1.5.6=pyhd8ed1ab_0
-  - nettle=3.8.1=hc379101_1
-  - notebook=6.5.4=pyha770c72_0
-  - notebook-shim=0.2.2=pyhd8ed1ab_0
-  - numpy=1.24.2=py39h7360e5f_0
-  - openh264=2.3.1=hcb278e6_2
-  - openjpeg=2.5.0=hfec8fc6_2
-  - openssl=3.1.1=hd590300_1
-  - orc=1.9.0=h385abfd_1
-  - orjson=3.8.10=py39hd8b4457_0
-  - p11-kit=0.24.1=hc5aa10d_0
-  - packaging=23.1=pyhd8ed1ab_0
-  - pandas=2.0.0=py39h2ad29b5_0
-  - pandoc=2.19.2=h32600fe_2
-  - pandocfilters=1.5.0=pyhd8ed1ab_0
-  - parso=0.8.3=pyhd8ed1ab_0
-  - patsy=0.5.3=pyhd8ed1ab_0
-  - pexpect=4.8.0=pyh1a96a4e_2
-  - pickleshare=0.7.5=py_1003
-  - pillow=9.5.0=py39h7207d5c_0
-  - pip=23.1=pyhd8ed1ab_0
-  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
-  - platformdirs=3.2.0=pyhd8ed1ab_0
-  - pooch=1.7.0=pyha770c72_3
-  - prometheus_client=0.16.0=pyhd8ed1ab_0
-  - prompt-toolkit=3.0.38=pyha770c72_0
-  - prompt_toolkit=3.0.38=hd8ed1ab_0
-  - psutil=5.9.5=py39h72bdee0_0
-  - pthread-stubs=0.4=h36c2ea0_1001
-  - ptyprocess=0.7.0=pyhd3deb0d_0
-  - pure_eval=0.2.2=pyhd8ed1ab_0
-  - pyarrow=12.0.1=py39hfbd5978_5_cpu
-  - pycparser=2.21=pyhd8ed1ab_0
-  - pydantic=1.10.7=py39h72bdee0_0
-  - pydub=0.25.1=pyhd8ed1ab_0
-  - pygments=2.15.1=pyhd8ed1ab_0
-  - pyopenssl=23.1.1=pyhd8ed1ab_0
-  - pyparsing=3.0.9=pyhd8ed1ab_0
-  - pyrsistent=0.19.3=py39h72bdee0_0
-  - pysocks=1.7.1=pyha2e5f31_6
-  - python=3.9.16=h2782a2a_0_cpython
-  - python-dateutil=2.8.2=pyhd8ed1ab_0
-  - python-fastjsonschema=2.16.3=pyhd8ed1ab_0
-  - python-json-logger=2.0.7=pyhd8ed1ab_0
-  - python-multipart=0.0.6=pyhd8ed1ab_0
-  - python-tzdata=2023.3=pyhd8ed1ab_0
-  - python-xxhash=3.2.0=py39h72bdee0_0
-  - python_abi=3.9=3_cp39
-  - pytz=2023.3=pyhd8ed1ab_0
-  - pyyaml=6.0=py39hb9d737c_5
-  - pyzmq=25.0.2=py39h0be026e_0
-  - rdma-core=28.9=h59595ed_1
-  - re2=2023.03.02=h8c504da_0
-  - readline=8.2=h8228510_1
-  - regex=2023.6.3=py39hd1e30aa_0
-  - requests=2.28.2=pyhd8ed1ab_1
-  - responses=0.18.0=pyhd8ed1ab_0
-  - rfc3339-validator=0.1.4=pyhd8ed1ab_0
-  - rfc3986-validator=0.1.1=pyh9f0ad1d_0
-  - s2n=1.3.46=h06160fa_0
-  - sacremoses=0.0.53=pyhd8ed1ab_0
-  - safetensors=0.3.1=py39h9fdd4d6_0
-  - scipy=1.10.1=py39he83f1e1_0
-  - seaborn=0.12.2=hd8ed1ab_0
-  - seaborn-base=0.12.2=pyhd8ed1ab_0
-  - semantic_version=2.10.0=pyhd8ed1ab_0
-  - send2trash=1.8.0=pyhd8ed1ab_0
-  - setuptools=67.6.1=pyhd8ed1ab_0
-  - six=1.16.0=pyh6c4a22f_0
-  - snappy=1.1.10=h9fff704_0
-  - sniffio=1.3.0=pyhd8ed1ab_0
-  - soupsieve=2.3.2.post1=pyhd8ed1ab_0
-  - stack_data=0.6.2=pyhd8ed1ab_0
-  - starlette=0.26.1=pyhd8ed1ab_0
-  - statsmodels=0.13.5=py39h2ae25f5_2
-  - svt-av1=1.4.1=hcb278e6_0
-  - terminado=0.17.1=pyh41d4057_0
-  - tinycss2=1.2.1=pyhd8ed1ab_0
-  - tk=8.6.12=h27826a3_0
-  - tokenizers=0.13.3=py39h585fa2d_0
-  - tomli=2.0.1=pyhd8ed1ab_0
-  - toolz=0.12.0=pyhd8ed1ab_0
-  - tornado=6.3=py39h72bdee0_0
-  - tqdm=4.65.0=pyhd8ed1ab_1
-  - traitlets=5.9.0=pyhd8ed1ab_0
-  - transformers=4.31.0
-  - typing-extensions=4.5.0=hd8ed1ab_0
-  - typing_extensions=4.5.0=pyha770c72_0
-  - tzdata=2023c=h71feb2d_0
-  - uc-micro-py=1.0.1=pyhd8ed1ab_0
-  - ucx=1.14.1=hf587318_2
-  - unicodedata2=15.0.0=py39hb9d737c_0
-  - urllib3=1.26.15=pyhd8ed1ab_0
-  - uvicorn=0.21.1=py39hf3d152e_0
-  - wcwidth=0.2.6=pyhd8ed1ab_0
-  - webencodings=0.5.1=py_1
-  - websocket-client=1.5.1=pyhd8ed1ab_0
-  - websockets=11.0.2=py39h72bdee0_0
-  - wheel=0.40.0=pyhd8ed1ab_0
-  - wordcloud=1.8.2.2=py39hb9d737c_1
-  - x264=1!164.3095=h166bdaf_2
-  - x265=3.5=h924138e_3
-  - xorg-fixesproto=5.0=h7f98852_1002
-  - xorg-kbproto=1.0.7=h7f98852_1002
-  - xorg-libx11=1.8.4=h0b41bf4_0
-  - xorg-libxau=1.0.9=h7f98852_0
-  - xorg-libxdmcp=1.1.3=h7f98852_0
-  - xorg-libxext=1.3.4=h0b41bf4_2
-  - xorg-libxfixes=5.0.3=h7f98852_1004
-  - xorg-xextproto=7.3.0=h0b41bf4_1003
-  - xorg-xproto=7.0.31=h7f98852_1007
-  - xxhash=0.8.1=h0b41bf4_0
-  - xz=5.2.6=h166bdaf_0
-  - y-py=0.5.9=py39h50f1755_0
-  - yaml=0.2.5=h7f98852_2
-  - yarl=1.8.2=py39hb9d737c_0
-  - ypy-websocket=0.8.2=pyhd8ed1ab_0
-  - zeromq=4.3.4=h9c3ff4c_1
-  - zipp=3.15.0=pyhd8ed1ab_0
-  - zstd=1.5.2=h3eb15da_6
-  - pip:
-      - cmake==3.25.0
-      - cssselect2==0.7.0
-      - glypy==1.0.8
-      - hjson==3.1.0
-      - joblib==1.3.1
-      - lit==15.0.7
-      - lxml==4.9.2
-      - mpmath==1.2.1
-      - networkx==3.0
-      - pmw-py3==2.1
-      - preppy==4.2.1
-      - scikit-learn==1.3.0
-      - svglib==1.4.1
-      - sympy==1.11.1
-      - threadpoolctl==3.2.0
-      - torch==2.0.1
-      - torchaudio==2.0.2
-      - torchvision==0.15.2
-      - triton==2.0.0
+biopython=1.81=py39h72bdee0_0
+gradio=3.23.0=pyhd8ed1ab_0
+huggingface_hub=0.16.4=pyhd8ed1ab_0
+matplotlib-base=3.7.1=py39he190548_0
+numpy=1.24.2=py39h7360e5f_0
+pandas=2.0.0=py39h2ad29b5_0
+pickleshare=0.7.5=py_1003
+pillow=9.5.0=py39h7207d5c_0
+pip=23.1=pyhd8ed1ab_0
+python=3.9.16=h2782a2a_0_cpython
+scipy=1.10.1=py39he83f1e1_0
+seaborn=0.12.2=hd8ed1ab_0
+tokenizers=0.13.3=py39h585fa2d_0
+tqdm=4.65.0=pyhd8ed1ab_1
+transformers=4.31.0
+scikit-learn==1.3.0
+torch==2.0.1
+torchaudio==2.0.2
+torchvision==0.15.2