# Copyright 2021 DeepMind Technologies Limited. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # ============================================================================== """Unit tests for `probing.py`.""" from absl.testing import absltest from clrs._src import probing import jax.numpy as jnp import numpy as np # pylint: disable=invalid-name class ProbingTest(absltest.TestCase): def test_array(self): A_pos = np.array([1, 2, 0, 4, 3]) expected = np.array([2, 1, 1, 4, 0]) out = probing.array(A_pos) np.testing.assert_array_equal(expected, out) def test_array_cat(self): A = np.array([2, 1, 0, 1, 1]) expected = np.array([ [0, 0, 1], [0, 1, 0], [1, 0, 0], [0, 1, 0], [0, 1, 0] ]) out = probing.array_cat(A, 3) np.testing.assert_array_equal(expected, out) def test_heap(self): A_pos = np.array([1, 3, 5, 0, 7, 4, 2, 6]) expected = np.array([3, 1, 2, 1, 5, 1, 6, 3]) out = probing.heap(A_pos, heap_size=6) np.testing.assert_array_equal(expected, out) def test_graph(self): G = np.array([ [0.0, 7.0, -1.0, -3.9, 7.452], [0.0, 0.0, 133.0, 0.0, 9.3], [0.5, 0.1, 0.22, 0.55, 0.666], [7.0, 6.1, 0.2, 0.0, 0.0], [0.0, 3.0, 0.0, 1.0, 0.5] ]) expected = np.array([ [1.0, 1.0, 1.0, 1.0, 1.0], [0.0, 1.0, 1.0, 0.0, 1.0], [1.0, 1.0, 1.0, 1.0, 1.0], [1.0, 1.0, 1.0, 1.0, 0.0], [0.0, 1.0, 0.0, 1.0, 1.0] ]) out = probing.graph(G) np.testing.assert_array_equal(expected, out) def test_mask_one(self): expected = np.array([0, 0, 0, 1, 0]) out = probing.mask_one(3, 5) np.testing.assert_array_equal(expected, out) def test_strings_id(self): T_pos = np.array([0, 1, 2, 3, 4]) P_pos = np.array([0, 1, 2]) expected = np.array([0, 0, 0, 0, 0, 1, 1, 1]) out = probing.strings_id(T_pos, P_pos) np.testing.assert_array_equal(expected, out) def test_strings_pair(self): pair_probe = np.array([ [0.5, 3.1, 9.1, 7.3], [1.0, 0.0, 8.0, 9.3], [0.1, 5.0, 0.0, 1.2] ]) expected = np.array([ [0.0, 0.0, 0.0, 0.5, 3.1, 9.1, 7.3], [0.0, 0.0, 0.0, 1.0, 0.0, 8.0, 9.3], [0.0, 0.0, 0.0, 0.1, 5.0, 0.0, 1.2], [0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0], [0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0] ]) out = probing.strings_pair(pair_probe) np.testing.assert_equal(expected, out) def test_strings_pair_cat(self): pair_probe = np.array([ [0, 2, 1], [2, 2, 0] ]) expected = np.array([ [ [0, 0, 0, -1], [0, 0, 0, -1], [1, 0, 0, 0], [0, 0, 1, 0], [0, 1, 0, 0], ], [ [0, 0, 0, -1], [0, 0, 0, -1], [0, 0, 1, 0], [0, 0, 1, 0], [1, 0, 0, 0], ], [ [0, 0, 0, -1], [0, 0, 0, -1], [0, 0, 0, -1], [0, 0, 0, -1], [0, 0, 0, -1], ], [ [0, 0, 0, -1], [0, 0, 0, -1], [0, 0, 0, -1], [0, 0, 0, -1], [0, 0, 0, -1], ], [ [0, 0, 0, -1], [0, 0, 0, -1], [0, 0, 0, -1], [0, 0, 0, -1], [0, 0, 0, -1], ], ]) out = probing.strings_pair_cat(pair_probe, 3) np.testing.assert_equal(expected, out) def test_strings_pi(self): T_pos = np.array([0, 1, 2, 3, 4, 5]) P_pos = np.array([0, 1, 2, 3]) pi = np.array([3, 1, 0, 2]) expected = np.array( [0, 1, 2, 3, 4, 5, 9, 7, 6, 8] ) out = probing.strings_pi(T_pos, P_pos, pi) np.testing.assert_array_equal(expected, out) def test_strings_pos(self): T_pos = np.array([0, 1, 2, 3, 4]) P_pos = np.array([0, 1, 2, 3]) expected = np.array( [0.0, 0.2, 0.4, 0.6, 0.8, 0.0, 0.25, 0.5, 0.75] ) out = probing.strings_pos(T_pos, P_pos) np.testing.assert_array_equal(expected, out) def test_strings_pred(self): T_pos = np.array([0, 1, 2, 3, 4]) P_pos = np.array([0, 1, 2]) expected = np.array([0, 0, 1, 2, 3, 5, 5, 6]) out = probing.strings_pred(T_pos, P_pos) np.testing.assert_array_equal(expected, out) class PermutationsTest(absltest.TestCase): def test_pointers_to_permutation(self): pointers = jnp.array([2, 1, 1]) perm, first = probing.predecessor_to_cyclic_predecessor_and_first(pointers) np.testing.assert_array_equal( perm, np.array([[0, 0, 1], [1, 0, 0], [0, 1, 0]])) np.testing.assert_array_equal(first, np.array([0, 1, 0])) def test_pointers_to_permutation_already_sorted(self): pointers = jnp.array([0, 0, 1, 2, 3, 4]) perm, first = probing.predecessor_to_cyclic_predecessor_and_first(pointers) np.testing.assert_array_equal(perm, np.roll(np.eye(6), 1, 0)) np.testing.assert_array_equal(first, np.eye(6)[0]) if __name__ == "__main__": absltest.main()