dwb2023 commited on
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b040a24
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1 Parent(s): 6e5e29d

Update app.py

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  1. app.py +20 -17
app.py CHANGED
@@ -126,20 +126,6 @@ def process_image(image, task_prompt, text_input=None, model_id='dwb2023/florenc
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  else:
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  return "", None # Return empty string and None for unknown task prompts
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-
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- def process_segmentation(image_path, annotation_file_path):
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- coco = COCO(annotation_file_path)
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- img_id = list(coco.imgs.keys())[0]
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- img_info = coco.loadImgs(img_id)[0]
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- ann_ids = coco.getAnnIds(imgIds=img_id)
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- anns = coco.loadAnns(ann_ids)
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-
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- image = Image.open(image_path)
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- for ann in anns:
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- if 'segmentation' in ann and ann['segmentation']:
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- image = draw_polygons(image, {'polygons': ann['segmentation'], 'labels': [coco.loadCats(ann['category_id'])[0]['name']]})
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- return image
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-
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  single_task_list =[
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  'Object Detection'
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  ]
@@ -147,10 +133,28 @@ single_task_list =[
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  # Define the path to the example images and annotations file
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  example_image_dir = 'examples/bccd-test/'
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  annotations_file_path = os.path.join(example_image_dir, '_annotations.coco.json')
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-
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- # Get the list of example image files
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  example_images = [f for f in os.listdir(example_image_dir) if f.endswith('.jpg')]
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  with gr.Blocks(theme="sudeepshouche/minimalist") as demo:
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  gr.Markdown("## 🧬OmniScience - building teams of fine tuned VLM models for diagnosis and detection 🔧")
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  gr.Markdown("- 🔬Florence-2 Model Proof of Concept, focusing on Object Detection <OD> tasks.")
@@ -159,7 +163,6 @@ with gr.Blocks(theme="sudeepshouche/minimalist") as demo:
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  gr.Markdown("BCCD Datasets on Hugging Face:")
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  gr.Markdown("- [🌺 Florence 2](https://huggingface.co/datasets/dwb2023/roboflow100-bccd-florence2/viewer/default/test?q=BloodImage_00038_jpg.rf.1b0ce1635e11b3b49302de527c86bb02.jpg), [💎 PaliGemma](https://huggingface.co/datasets/dwb2023/roboflow-bccd-paligemma/viewer/default/test?q=BloodImage_00038_jpg.rf.1b0ce1635e11b3b49302de527c86bb02.jpg)")
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-
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  with gr.Tab(label="Florence-2 Object Detection"):
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  with gr.Row():
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  with gr.Column():
 
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  else:
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  return "", None # Return empty string and None for unknown task prompts
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  single_task_list =[
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  'Object Detection'
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  ]
 
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  # Define the path to the example images and annotations file
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  example_image_dir = 'examples/bccd-test/'
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  annotations_file_path = os.path.join(example_image_dir, '_annotations.coco.json')
 
 
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  example_images = [f for f in os.listdir(example_image_dir) if f.endswith('.jpg')]
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+ cfg = get_cfg()
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+ cfg.merge_from_file(model_zoo.get_config_file("COCO-InstanceSegmentation/mask_rcnn_R_50_FPN_3x.yaml"))
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+ cfg.MODEL.ROI_HEADS.SCORE_THRESH_TEST = 0.5
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+ cfg.MODEL.WEIGHTS = model_zoo.get_checkpoint_url("COCO-InstanceSegmentation/mask_rcnn_R_50_FPN_3x.yaml")
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+ cfg.MODEL.DEVICE = "cuda" if torch.cuda.is_available() else "cpu"
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+ predictor = DefaultPredictor(cfg)
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+
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+ def process_image(image_name):
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+ image_path = os.path.join(example_image_dir, image_name)
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+ image = cv2.imread(image_path)
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+ outputs = predictor(image)
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+ v = Visualizer(image[:, :, ::-1], MetadataCatalog.get(cfg.DATASETS.TRAIN[0]), scale=1.2)
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+ out = v.draw_instance_predictions(outputs["instances"].to("cpu"))
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+ plt.figure(figsize=(14, 10))
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+ plt.imshow(out.get_image()[:, :, ::-1])
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+ plt.axis('off')
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+ plt.show()
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+ return out.get_image()[:, :, ::-1]
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+
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+
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  with gr.Blocks(theme="sudeepshouche/minimalist") as demo:
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  gr.Markdown("## 🧬OmniScience - building teams of fine tuned VLM models for diagnosis and detection 🔧")
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  gr.Markdown("- 🔬Florence-2 Model Proof of Concept, focusing on Object Detection <OD> tasks.")
 
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  gr.Markdown("BCCD Datasets on Hugging Face:")
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  gr.Markdown("- [🌺 Florence 2](https://huggingface.co/datasets/dwb2023/roboflow100-bccd-florence2/viewer/default/test?q=BloodImage_00038_jpg.rf.1b0ce1635e11b3b49302de527c86bb02.jpg), [💎 PaliGemma](https://huggingface.co/datasets/dwb2023/roboflow-bccd-paligemma/viewer/default/test?q=BloodImage_00038_jpg.rf.1b0ce1635e11b3b49302de527c86bb02.jpg)")
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  with gr.Tab(label="Florence-2 Object Detection"):
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  with gr.Row():
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  with gr.Column():