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matanninio
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Commit
·
ec656e5
1
Parent(s):
e3cb71b
adde new tdi peer model
Browse files
app.py
CHANGED
@@ -11,10 +11,10 @@ from mammal_demo.tcr_task import TcrTask
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MAIN_MARKDOWN_TEXT = """
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The **[ibm/biomed.omics.bl.sm.ma-ted-458m](https://huggingface.co/models?sort=trending&search=ibm%2Fbiomed.omics.bl)** model family is a biomedical foundation model and its finetuned variants trained on over 2 billion biological samples across multiple modalities, including proteins, small molecules, and single-cell gene data.
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Designed for robust performance, it achieves state-of-the-art results over a variety of tasks across the entire drug discovery pipeline and the diverse biomedical domains.
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Based on the [**MAMMAL** - **M**olecular **A**ligned **M**ulti-**M**odal **A**rchitecture and **L**anguage](https://arxiv.org/abs/2410.22367v2), a flexible, multi-domain architecture with an adaptable task prompt syntax.
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The syntax allows for dynamic combinations of tokens and scalars, enabling classification, regression, and generation tasks either within a single domain or with cross-domain entities.
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This page demonstraits a variety of drug discovery and biomedical tasks for the model family. Select the task to access the specific demos.
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@@ -39,6 +39,11 @@ all_models.register_model(
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model_path="ibm/biomed.omics.bl.sm.ma-ted-458m.dti_bindingdb_pkd",
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task_list=[tdi_task],
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)
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all_models.register_model(
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model_path="ibm/biomed.omics.bl.sm.ma-ted-458m.tcr_epitope_bind",
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task_list=[tcr_task],
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@@ -84,8 +89,8 @@ def create_application():
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visible=value is not None,
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)
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with gr.Blocks(theme="Zarkel/IBM_Carbon_Theme") as application:
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task_dropdown = gr.Dropdown(
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choices=["Select task"] + list(all_tasks.keys()),
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label="Mammal Task",
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@@ -108,16 +113,6 @@ def create_application():
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visible=False,
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)
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def echo(value):
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print(value)
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return value
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# goto_card_button.click(
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# fn=None,
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# inputs=model_name_dropdown,
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# js=f"(model_name_dropdown) => {{ window.open('https://huggingface.co/{model_name_dropdown}', '_blank') }}",
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# )
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model_name_dropdown.change(
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model_change, inputs=[model_name_dropdown], outputs=[goto_card_button]
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)
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MAIN_MARKDOWN_TEXT = """
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+
The **[ibm/biomed.omics.bl.sm.ma-ted-458m](https://huggingface.co/models?sort=trending&search=ibm%2Fbiomed.omics.bl)** model family is a biomedical foundation model and its finetuned variants trained on over 2 billion biological samples across multiple modalities, including proteins, small molecules, and single-cell gene data.
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+
Designed for robust performance, it achieves state-of-the-art results over a variety of tasks across the entire drug discovery pipeline and the diverse biomedical domains.
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+
Based on the [**MAMMAL** - **M**olecular **A**ligned **M**ulti-**M**odal **A**rchitecture and **L**anguage](https://arxiv.org/abs/2410.22367v2), a flexible, multi-domain architecture with an adaptable task prompt syntax.
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The syntax allows for dynamic combinations of tokens and scalars, enabling classification, regression, and generation tasks either within a single domain or with cross-domain entities.
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This page demonstraits a variety of drug discovery and biomedical tasks for the model family. Select the task to access the specific demos.
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model_path="ibm/biomed.omics.bl.sm.ma-ted-458m.dti_bindingdb_pkd",
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task_list=[tdi_task],
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)
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all_models.register_model(
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model_path="ibm/biomed.omics.bl.sm.ma-ted-458m.dti_bindingdb_pkd_peer",
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task_list=[tdi_task],
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)
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all_models.register_model(
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model_path="ibm/biomed.omics.bl.sm.ma-ted-458m.tcr_epitope_bind",
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task_list=[tcr_task],
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visible=value is not None,
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)
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with gr.Blocks(theme="../Zarkel/IBM_Carbon_Theme") as application:
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gr.Markdown(MAIN_MARKDOWN_TEXT, visible=True)
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task_dropdown = gr.Dropdown(
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choices=["Select task"] + list(all_tasks.keys()),
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label="Mammal Task",
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visible=False,
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)
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model_name_dropdown.change(
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model_change, inputs=[model_name_dropdown], outputs=[goto_card_button]
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)
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