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app.py
CHANGED
@@ -20,20 +20,20 @@ BUNDLE_PATH = os.path.join(torch.hub.get_dir(), 'bundle', BUNDLE_NAME)
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# Title and description
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title = '<h1 style="text-align: center;">Segment Brain Tumors with MONAI! π§ </h1>'
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description = """
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## To run
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Upload a brain MRI image file, or try out one of the examples below!
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If you want to see a different slice, update the slider
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More details on the model can be found [here!](https://huggingface.co/katielink/brats_mri_segmentation_v0.1.0)
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## Disclaimer
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This is an example, not to be used for diagnostic purposes.
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"""
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references = """
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## References
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1. Myronenko, Andriy. "3D MRI brain tumor segmentation using autoencoder regularization." International MICCAI Brainlesion Workshop. Springer, Cham, 2018. https://arxiv.org/abs/1810.11654.
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2. Menze BH, et al. "The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)", IEEE Transactions on Medical Imaging 34(10), 1993-2024 (2015) DOI: 10.1109/TMI.2014.2377694
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@@ -42,7 +42,7 @@ references = """
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examples = [
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['examples/BRATS_485.nii.gz', 65],
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['examples/BRATS_486.nii.gz',
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]
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# Load the MONAI pretrained model from Hugging Face Hub
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# Title and description
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title = '<h1 style="text-align: center;">Segment Brain Tumors with MONAI! π§ </h1>'
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description = """
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## π To run
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Upload a brain MRI image file, or try out one of the examples below!
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If you want to see a different slice, update the slider.
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More details on the model can be found [here!](https://huggingface.co/katielink/brats_mri_segmentation_v0.1.0)
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## β οΈ Disclaimer
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This is an example, not to be used for diagnostic purposes.
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"""
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references = """
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## π References
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1. Myronenko, Andriy. "3D MRI brain tumor segmentation using autoencoder regularization." International MICCAI Brainlesion Workshop. Springer, Cham, 2018. https://arxiv.org/abs/1810.11654.
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2. Menze BH, et al. "The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)", IEEE Transactions on Medical Imaging 34(10), 1993-2024 (2015) DOI: 10.1109/TMI.2014.2377694
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examples = [
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['examples/BRATS_485.nii.gz', 65],
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['examples/BRATS_486.nii.gz', 80]
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]
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# Load the MONAI pretrained model from Hugging Face Hub
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