#--- PREREQS: # - create a local folder dedicated to WSI image mgmt: (docker pwd)/data # - populate the folder with raw data, wsi and tiles # - docker run --name -v #--- utilize a light linux distro for python apps FROM python:3.10.9-slim-bullseye RUN pip install --no-cache-dir --upgrade pip RUN apt-get update -y && apt-get install -y ffmpeg libsm6 libxext6 # Set up a new user named "user" with user ID 1000 # Switch to the "user" user RUN useradd -m -u 1000 user USER user # Set home to the user's home directory ENV HOME=/home/user \ PATH=/home/user/.local/bin:$PATH #--- set docker image working directory to /app WORKDIR $HOME/app # Try and run pip command after setting the user with `USER user` to avoid permission issues with Python #RUN pip install --no-cache-dir --upgrade pip #--- copy only the requirements.txt file #--- set docker image working directory to /app #--- Not: this is reorg'd in an attempt to reduce the rebuilding of layers COPY --chown=user ./requirements.txt $HOME/app/requirements.txt COPY --chown=user ./packages.txt $HOME/app/packages.txt #--- install all lib dependencies into the image #RUN pip3 install -r $HOME/app/requirements.txt RUN pip install --no-cache-dir --upgrade -r $HOME/app/requirements.txt #RUN apt-get update -y && apt-get install -y ffmpeg libsm6 libxext6 #--- copy all files from the local pwd to the docker image /app folder #--- .dockerignore: ensure no local data folders or files (images) are copied into the docker image/container COPY --chown=user . $HOME/app #--- for streamlit; external 49400; internal 39400 # localExec: (from root folder) streamlit run app.py --server.port=39400 --server.maxUploadSize=2000 EXPOSE 49400 #CMD ["streamlit", "run", "app.py", "--server.port=39400", "--server.maxUploadSize=2000"] #--- for fastapi; external 49500; internal 39500 # localExec: (from root folder) uvicorn main:app --reload --workers 1 --host 0.0.0.0 --port 39500 EXPOSE 49500 #CMD ["uvicorn", "main:app", "--reload", "--host=0.0.0.0", "--port=39500"] #--- start streamlit and fastapi from a helper utility script #CMD ./util_startLocal_streamlitFastApi.sh CMD $HOME/app/scripts/docker/util_docker_preRun.sh #--- to build/rebuild the image; make sure you stop and remove the container if you are replacing/upgrading; or change the version tag# from 0.1 # docker build -t img_stm_omdenasaudi_hcc:0.1 . # docker build -t img_stm_omdenasaudi_hcc:0.1.3 . #--- to tag the image prior to push to DockerHub; docker login and then register user/image:tag #--- to push this image to DockerHub, example based on the repo: kidcoconut73/img_stm_omdenasaudi_hcc # docker tag img_omdenasaudi_hcc:0.1 kidcoconut73/img_stm_omdenasaudi_hcc:demo # docker tag img_omdenasaudi_hcc:0.1 kidcoconut73/img_stm_omdenasaudi_hcc:0.1 # docker push kidcoconut73/img_stm_omdenasaudi_hcc:demo #--- to run the container from the image; specific port mapping (-p) vs any available port mapping (-P) # docker run -p 49400:39400 -p 49500:39500 --name ctr_stmOmdenaSaudiHcc -v ./data:/app/data img_stm_omdenasaudi_hcc:0.1 # docker run -p 49400:39400 -p 49500:39500 --name ctr_stmOmdenaSaudiHcc img_stm_omdenasaudi_hcc:0.1 # docker run -P --name ctr_stmOmdenaHcc img_stm_omdenasaudi_hcc:0.1 #--- open all ports defined by Docker EXPOSE #--- ISSUE: uvicorn bug does not allow ctl-C break of fastapi through terminal #--- WORKAROUND: you have to run a docker or docker compose kill cmd; eg docker kill #--- Docker build log # from python:3.10.9-slim-bullseye size: 4.21gb time: >yyys # from python:3.10.9-slim-bullseye size: 4.21gb time: >3500s :0.13 expose streamlit 49400