import torch import gradio as gr import json import os from phate import PHATEAE from funcs.som import ClusterSOM from funcs.tools import numpy_to_native from funcs.processor import process_data from funcs.plot_func import plot_sensor_data_from_json from funcs.dataloader import BaseDataset2, read_json_files DEVICE = torch.device("cpu") reducer10d = PHATEAE(epochs=30, n_components=10, lr=.0001, batch_size=128, t='auto', knn=8, relax=True, metric='euclidean') reducer10d.load('models/r10d.pth') cluster_som = ClusterSOM() cluster_som.load("models/cluster_som2.pkl") # ml inference def get_som_mp4(file, slice_select, reducer=reducer10d, cluster=cluster_som): try: train_x, train_y = read_json_files(file) except: train_x, train_y = read_json_files(file.name) # Convert tensors to numpy arrays if necessary if isinstance(train_x, torch.Tensor): train_x = train_x.numpy() if isinstance(train_y, torch.Tensor): train_y = train_y.numpy() # load the time series slices of the data 4*3*2*64 (feeds+axis*sensor*samples) + 5 for time diff data = BaseDataset2(train_x.reshape(len(train_x), -1) / 32768, train_y) #compute the 10 dimensional embeding vector embedding10d = reducer.transform(data) # prediction = cluster_som.predict(embedding10d) fig = cluster.plot_activation_v2(embedding10d, slice_select) return fig def attach_label_to_json(json_file, label_text): # Read the JSON file try: with open(json_file, "r") as f: slices = json.load(f) except: with open(json_file.name, "r") as f: slices = json.load(f) slices['label'] = label_text with open(f'manual_labelled_{os.path.basename(json_file.name)}', "w") as f: json.dump(numpy_to_native(slices), f, indent=2) return f'manual_labelled_{os.path.basename(json_file.name)}' with gr.Blocks(title='Cabasus') as cabasus_sensor: title = gr.Markdown("

Data gathering and processing

") with gr.Tab("Convert"): with gr.Row(): csv_file_box = gr.File(label='Upload CSV File') with gr.Column(): processed_file_box = gr.File(label='Processed CSV File') json_file_box = gr.File(label='Generated Json file') with gr.Row(): slice_size_slider = gr.Slider(minimum=16, maximum=512, step=1, value=64, label="Slice Size", visible=False) sample_rate = gr.Slider(minimum=1, maximum=199, step=1, value=20, label="Sample rate", visible=False) with gr.Row(): window_size_slider = gr.Slider(minimum=0, maximum=100, step=2, value=10, label="Window Size", visible=False) repeat_process = gr.Button('Restart process', visible=False) with gr.Row(): leg_dropdown = gr.Dropdown(choices=['GZ1', 'GZ2', 'GZ3', 'GZ4'], label='select leg', value='GZ1') with gr.Row(): plot_box_leg = gr.Plot(label="Filtered Signal Plot") plot_box_overlay = gr.Plot(label="Overlay Signal Plot") with gr.Row(): plot_slice_leg = gr.Plot(label="Sliced Signal Plot") get_all_slice = gr.Plot(label="Real Signal Plot") with gr.Row(): som_create = gr.Button('generate som') slice_slider = gr.Slider(minimum=1, maximum=300, label='Current slice', step=1) som_figures = gr.Plot(label="som activations") with gr.Row(): slice_json_box = gr.File(label='Slice json file') with gr.Column(): label_name = gr.Textbox(label="enter the label name") button_label_Add = gr.Button('attach label') slice_json_label_box = gr.File(label='Slice json labelled file') slices_per_leg = gr.Textbox(label="Number of slices found per LEG") csv_file_box.change(process_data, inputs=[csv_file_box, slice_size_slider, sample_rate, window_size_slider], outputs=[processed_file_box, json_file_box, slices_per_leg, plot_box_leg, plot_box_overlay, slice_slider, plot_slice_leg, get_all_slice, slice_json_box]) leg_dropdown.change(plot_sensor_data_from_json, inputs=[json_file_box, leg_dropdown, slice_slider], outputs=[plot_box_leg, plot_slice_leg, get_all_slice, slice_json_box]) repeat_process.click(process_data, inputs=[csv_file_box, slice_size_slider, sample_rate, window_size_slider], outputs=[processed_file_box, json_file_box, slices_per_leg, plot_box_leg, plot_box_overlay, slice_slider, plot_slice_leg, get_all_slice, slice_json_box]) slice_slider.change(plot_sensor_data_from_json, inputs=[json_file_box, leg_dropdown, slice_slider], outputs=[plot_box_leg, plot_slice_leg, get_all_slice, slice_json_box]) som_create.click(get_som_mp4, inputs=[json_file_box, slice_slider], outputs=[som_figures]) button_label_Add.click(attach_label_to_json, inputs=[slice_json_box, label_name], outputs=[slice_json_label_box]) cabasus_sensor.queue(concurrency_count=2).launch(debug=True)