import streamlit as st import pandas as pd import numpy as np from zipfile import ZipFile import plotly.express as px import plotly.graph_objs as go LLR_FILE='./sample gene scores.zip' def load_LLR(uniprot_id): '''Loads the LLRs for a given uniprot id. Returns a 20xL dataframe rows are indexed by AA change, (AAorder=['K','R','H','E','D','N','Q','T','S','C','G','A','V','L','I','M','P','Y','F','W']) columns indexed by WT_AA+position e.g, "G 12" Usage example: load_LLR('P01116') or load_LLR('P01116-2')''' with ZipFile(LLR_FILE) as myzip: data = myzip.open(myzip.namelist()[0]+uniprot_id+'_LLR.csv') return pd.read_csv(data,index_col=0) def plot_interactive(uniprot_id): primaryLLR = load_LLR(uniprot_id) is_dark = output.eval_js('document.documentElement.matches("[theme=dark]")') template='plotly_dark' if is_dark else 'plotly_white' fig = px.imshow(primaryLLR.values, x=primaryLLR.columns, y=primaryLLR.index, color_continuous_scale='Viridis_r',zmax=0, labels=dict(y="Amino acid change", x="Protein sequence", color="LLR"), template=template, title='uniprot_id: '+uniprot_id) fig.update_xaxes(tickangle=-90,range=[0,99],rangeslider=dict(visible=True),dtick=1) fig.update_yaxes(dtick=1) fig.update_layout({ 'plot_bgcolor': 'rgba(0, 0, 0, 0)', 'paper_bgcolor': 'rgba(0, 0, 0, 0)', },font={'family':'Arial','size':11}, hoverlabel=dict(font=dict(family='Arial', size=14))) fig.update_traces( hovertemplate="
".join([ "%{x} %{y}"+ " (%{z:.2f})", ])+'' ) return fig st.plotly_chart(plot_interactive('A0AV02-2'), use_container_width=True)