Spaces:
Runtime error
Runtime error
from stmol import showmol | |
import py3Dmol | |
import streamlit as st | |
import requests | |
sequence = st.text_input(label="Protein Sequence", value="MGSSHHHHHHSSGLVPRGSHMRGPNPTAASLEASAGPFTVRSFTVSRPSGYGAGTVYYPTNAGGTVGAIAIVPGYTARQSSIKWWGPRLASHGFVVITIDTNSTLDQPSSRSSQQMAALRQVASLNGTSSSPIYGKVDTARMGVMGWSMGGGGSLISAANNPSLKAAAPQAPWDSSTNFSSVTVPTLIFACENDSIAPVNSSALPIYDSMSRNAKQFLEINGGSHSCANSGNSNQALIGKKGVAWMKRFMDNDTRYSTFACENPNSTRVSDFRTANCSLEDPAANKARKEAELAAATAEQ") | |
headers = { | |
'Content-Type': 'application/x-www-form-urlencoded', | |
} | |
response = requests.post('https://api.esmatlas.com/foldSequence/v1/pdb/', headers=headers, data=sequence) | |
name = sequence[:3] + sequence[-3:] | |
pdb_filename = "test.pdb" | |
pdb_string = response.content.decode('utf-8') | |
with open(pdb_filename, "w") as out: | |
out.write(pdb_string) | |
# 1A2C | |
# Structure of thrombin inhibited by AERUGINOSIN298-A from a BLUE-GREEN ALGA | |
xyzview = py3Dmol.view(width=400, height=300) | |
xyzview.addModelsAsFrames(pdb_filename) | |
xyzview.setStyle({'cartoon':{'color':'spectrum'}}) | |
print("Set style") | |
showmol(xyzview, height = 500,width=800) | |
print("Displayed") |