initial setup
Browse files- .gitignore +141 -0
- .python-version +1 -0
- Dockerfile +18 -0
- Makefile +9 -0
- README.md +3 -3
- api/__init__.py +0 -0
- api/auth.py +18 -0
- api/constants.py +7 -0
- api/global_variables.py +0 -0
- api/inference/__init__.py +0 -0
- api/inference/router.py +35 -0
- api/inference/schema.py +28 -0
- api/main.py +66 -0
- api/requirements/__init__.py +0 -0
- api/requirements/router.py +35 -0
- api/requirements/schema.py +6 -0
- api/schema.py +33 -0
- entry.sh +4 -0
- pyproject.toml +11 -0
- uv.lock +0 -0
.gitignore
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@@ -0,0 +1,141 @@
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1 |
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# Byte-compiled / optimized / DLL files
|
2 |
+
__pycache__/
|
3 |
+
*.py[cod]
|
4 |
+
*$py.class
|
5 |
+
|
6 |
+
# C extensions
|
7 |
+
*.so
|
8 |
+
|
9 |
+
# Distribution / packaging
|
10 |
+
.Python
|
11 |
+
build/
|
12 |
+
develop-eggs/
|
13 |
+
dist/
|
14 |
+
downloads/
|
15 |
+
eggs/
|
16 |
+
.eggs/
|
17 |
+
lib/
|
18 |
+
lib64/
|
19 |
+
parts/
|
20 |
+
sdist/
|
21 |
+
var/
|
22 |
+
wheels/
|
23 |
+
pip-wheel-metadata/
|
24 |
+
share/python-wheels/
|
25 |
+
*.egg-info/
|
26 |
+
.installed.cfg
|
27 |
+
*.egg
|
28 |
+
MANIFEST
|
29 |
+
|
30 |
+
# PyInstaller
|
31 |
+
# Usually these files are written by a python script from a template
|
32 |
+
# before PyInstaller builds the exe, so as to inject date/other infos into it.
|
33 |
+
*.manifest
|
34 |
+
*.spec
|
35 |
+
|
36 |
+
# Installer logs
|
37 |
+
pip-log.txt
|
38 |
+
pip-delete-this-directory.txt
|
39 |
+
|
40 |
+
# Unit test / coverage reports
|
41 |
+
htmlcov/
|
42 |
+
.tox/
|
43 |
+
.nox/
|
44 |
+
.coverage
|
45 |
+
.coverage.*
|
46 |
+
.cache
|
47 |
+
nosetests.xml
|
48 |
+
coverage.xml
|
49 |
+
*.cover
|
50 |
+
*.py,cover
|
51 |
+
.hypothesis/
|
52 |
+
.pytest_cache/
|
53 |
+
|
54 |
+
# Translations
|
55 |
+
*.mo
|
56 |
+
*.pot
|
57 |
+
|
58 |
+
# Django stuff:
|
59 |
+
*.log
|
60 |
+
local_settings.py
|
61 |
+
db.sqlite3
|
62 |
+
db.sqlite3-journal
|
63 |
+
|
64 |
+
# Flask stuff:
|
65 |
+
instance/
|
66 |
+
.webassets-cache
|
67 |
+
|
68 |
+
# Scrapy stuff:
|
69 |
+
.scrapy
|
70 |
+
|
71 |
+
# Sphinx documentation
|
72 |
+
docs/_build/
|
73 |
+
|
74 |
+
# PyBuilder
|
75 |
+
target/
|
76 |
+
|
77 |
+
# Jupyter Notebook
|
78 |
+
.ipynb_checkpoints
|
79 |
+
|
80 |
+
# IPython
|
81 |
+
profile_default/
|
82 |
+
ipython_config.py
|
83 |
+
|
84 |
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# pipenv
|
85 |
+
# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
|
86 |
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# However, in case of collaboration, if having platform-specific dependencies or dependencies
|
87 |
+
# having no cross-platform support, pipenv may install dependencies that don't work, or not
|
88 |
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# install all needed dependencies.
|
89 |
+
#Pipfile.lock
|
90 |
+
|
91 |
+
# PEP 582; used by e.g. github.com/David-OConnor/pyflow
|
92 |
+
__pypackages__/
|
93 |
+
|
94 |
+
# Celery stuff
|
95 |
+
celerybeat-schedule
|
96 |
+
celerybeat.pid
|
97 |
+
|
98 |
+
# SageMath parsed files
|
99 |
+
*.sage.py
|
100 |
+
|
101 |
+
# Environments
|
102 |
+
.env
|
103 |
+
.venv
|
104 |
+
env/
|
105 |
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venv/
|
106 |
+
ENV/
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107 |
+
env.bak/
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108 |
+
venv.bak/
|
109 |
+
|
110 |
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# Spyder project settings
|
111 |
+
.spyderproject
|
112 |
+
.spyproject
|
113 |
+
|
114 |
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# Rope project settings
|
115 |
+
.ropeproject
|
116 |
+
|
117 |
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# mkdocs documentation
|
118 |
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/site
|
119 |
+
|
120 |
+
# mypy
|
121 |
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.mypy_cache/
|
122 |
+
.dmypy.json
|
123 |
+
dmypy.json
|
124 |
+
|
125 |
+
# Pyre type checker
|
126 |
+
.pyre/
|
127 |
+
|
128 |
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# Pickle files
|
129 |
+
*.pkl
|
130 |
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|
131 |
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# Various files
|
132 |
+
ignored
|
133 |
+
debug
|
134 |
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*.zip
|
135 |
+
lc0
|
136 |
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!bin/lc0
|
137 |
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wandb
|
138 |
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**/.DS_Store
|
139 |
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|
140 |
+
*secret*
|
141 |
+
.artifacts
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.python-version
ADDED
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1 |
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3.9
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Dockerfile
ADDED
@@ -0,0 +1,18 @@
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# Read the doc: https://huggingface.co/docs/hub/spaces-sdks-docker
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2 |
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# you will also find guides on how best to write your Dockerfile
|
3 |
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|
4 |
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FROM python:3.9
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5 |
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6 |
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RUN useradd -m -u 1000 user
|
7 |
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USER user
|
8 |
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ENV PATH="/home/user/.local/bin:$PATH"
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9 |
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10 |
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WORKDIR /app
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11 |
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12 |
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RUN pip install uv --no-cache-dir
|
13 |
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COPY --chown=user ./pyproject.toml pyproject.toml
|
14 |
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COPY --chown=user ./uv.lock uv.lock
|
15 |
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RUN uv sync
|
16 |
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|
17 |
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COPY --chown=user . /app
|
18 |
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ENTRYPOINT ["/app/entrypoint.sh"]
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Makefile
ADDED
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.PHONY dev:
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2 |
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dev:
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3 |
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@echo "Starting the application..."
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4 |
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@uv run uvicorn api.main:app --reload
|
5 |
+
|
6 |
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.PHONY start:
|
7 |
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start:
|
8 |
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@echo "Starting the application..."
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9 |
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@uv run uvicorn api.main:app --host 0.0.0.0 --port 8000
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README.md
CHANGED
@@ -1,10 +1,10 @@
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1 |
---
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2 |
-
title:
|
3 |
-
emoji:
|
4 |
colorFrom: red
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5 |
colorTo: yellow
|
6 |
sdk: docker
|
7 |
pinned: false
|
8 |
---
|
9 |
|
10 |
-
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1 |
---
|
2 |
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title: Team 13.4
|
3 |
+
emoji: 🛰️
|
4 |
colorFrom: red
|
5 |
colorTo: yellow
|
6 |
sdk: docker
|
7 |
pinned: false
|
8 |
---
|
9 |
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10 |
+
# Team 13.4
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api/__init__.py
ADDED
File without changes
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api/auth.py
ADDED
@@ -0,0 +1,18 @@
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"""
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2 |
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Authentication module for API
|
3 |
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"""
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4 |
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5 |
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from fastapi import HTTPException, Security
|
6 |
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from fastapi.security import api_key
|
7 |
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|
8 |
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from api import constants
|
9 |
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|
10 |
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api_key_header = api_key.APIKeyHeader(name="X-API-KEY")
|
11 |
+
|
12 |
+
|
13 |
+
async def validate_api_key(key: str = Security(api_key_header)):
|
14 |
+
if constants.X_API_KEY == "":
|
15 |
+
raise HTTPException(status_code=500, detail="API Key is not set in the server")
|
16 |
+
if key != constants.X_API_KEY:
|
17 |
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raise HTTPException(status_code=401, detail="Unauthorized - API Key is wrong")
|
18 |
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return None
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api/constants.py
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"""
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2 |
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Constants for the whole API.
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3 |
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"""
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4 |
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|
5 |
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import os
|
6 |
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|
7 |
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X_API_KEY = os.environ.get("X_API_KEY", "")
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api/global_variables.py
ADDED
File without changes
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api/inference/__init__.py
ADDED
File without changes
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api/inference/router.py
ADDED
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"""
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Generate router
|
3 |
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"""
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4 |
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import logging
|
6 |
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from contextlib import asynccontextmanager
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7 |
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|
8 |
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from fastapi import APIRouter
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9 |
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|
10 |
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from api.schema import SuccessDetail
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|
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@asynccontextmanager
|
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async def lifespan(app: APIRouter):
|
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logger = logging.getLogger("uvicorn")
|
16 |
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logger.info("Starting inference router...")
|
17 |
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yield
|
18 |
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logger.info("Shutting down inference router...")
|
19 |
+
|
20 |
+
|
21 |
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router = APIRouter(
|
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lifespan=lifespan,
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23 |
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)
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24 |
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|
25 |
+
|
26 |
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@router.get(
|
27 |
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"/",
|
28 |
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status_code=200,
|
29 |
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response_model=SuccessDetail,
|
30 |
+
)
|
31 |
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async def home():
|
32 |
+
"""
|
33 |
+
Submodule home page.
|
34 |
+
"""
|
35 |
+
return {"success": "Welcome to the inference submodule!"}
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api/inference/schema.py
ADDED
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"""
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2 |
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Schema for the inference endpoint
|
3 |
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"""
|
4 |
+
|
5 |
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from pydantic import BaseModel, validator
|
6 |
+
from enum import Enum
|
7 |
+
|
8 |
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class Sex(str, Enum):
|
9 |
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male = "m"
|
10 |
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female = "f"
|
11 |
+
|
12 |
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|
13 |
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class Patient(BaseModel):
|
14 |
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age: int
|
15 |
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sex: Sex
|
16 |
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|
17 |
+
@validator('age')
|
18 |
+
def patient_age_must_be_legit(cls, v):
|
19 |
+
if v < 18:
|
20 |
+
raise ValueError('age must be at least 18')
|
21 |
+
if v > 100:
|
22 |
+
raise ValueError('age must be at most 100')
|
23 |
+
return v
|
24 |
+
|
25 |
+
class InferenceRequest(BaseModel):
|
26 |
+
|
27 |
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model_name: str
|
28 |
+
patient: Patient
|
api/main.py
ADDED
@@ -0,0 +1,66 @@
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|
1 |
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"""
|
2 |
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Main API module.
|
3 |
+
"""
|
4 |
+
|
5 |
+
import logging
|
6 |
+
from contextlib import asynccontextmanager
|
7 |
+
|
8 |
+
from fastapi import FastAPI, Depends
|
9 |
+
from fastapi.middleware.cors import CORSMiddleware
|
10 |
+
|
11 |
+
from api.inference import router as inference_router
|
12 |
+
from api.requirements import router as requirements_router
|
13 |
+
from api import auth
|
14 |
+
from api.schema import SuccessDetail
|
15 |
+
|
16 |
+
|
17 |
+
@asynccontextmanager
|
18 |
+
async def lifespan(app: FastAPI):
|
19 |
+
logger = logging.getLogger("uvicorn")
|
20 |
+
logger.info(f"Starting up...")
|
21 |
+
yield
|
22 |
+
logger.info(f"Shutting down...")
|
23 |
+
|
24 |
+
|
25 |
+
app = FastAPI(
|
26 |
+
title="Team 13 API",
|
27 |
+
lifespan=lifespan,
|
28 |
+
)
|
29 |
+
|
30 |
+
origins = ["*"]
|
31 |
+
app.add_middleware(
|
32 |
+
CORSMiddleware,
|
33 |
+
allow_origins=origins,
|
34 |
+
allow_credentials=True,
|
35 |
+
allow_methods=["*"],
|
36 |
+
allow_headers=["*"],
|
37 |
+
)
|
38 |
+
|
39 |
+
|
40 |
+
@app.get(
|
41 |
+
"/",
|
42 |
+
tags=["HOME"],
|
43 |
+
summary="Home page",
|
44 |
+
status_code=200,
|
45 |
+
response_model=SuccessDetail,
|
46 |
+
)
|
47 |
+
async def home():
|
48 |
+
"""
|
49 |
+
Home page.
|
50 |
+
"""
|
51 |
+
return {"success": "Welcome to yet another API!"}
|
52 |
+
|
53 |
+
|
54 |
+
app.include_router(
|
55 |
+
requirements_router.router,
|
56 |
+
prefix="/requirements",
|
57 |
+
tags=["REQUIREMENTS"],
|
58 |
+
dependencies=[Depends(auth.validate_api_key)],
|
59 |
+
)
|
60 |
+
|
61 |
+
app.include_router(
|
62 |
+
inference_router.router,
|
63 |
+
prefix="/inference",
|
64 |
+
tags=["INFERENCE"],
|
65 |
+
dependencies=[Depends(auth.validate_api_key)],
|
66 |
+
)
|
api/requirements/__init__.py
ADDED
File without changes
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api/requirements/router.py
ADDED
@@ -0,0 +1,35 @@
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|
1 |
+
"""
|
2 |
+
Generate router
|
3 |
+
"""
|
4 |
+
|
5 |
+
import logging
|
6 |
+
from contextlib import asynccontextmanager
|
7 |
+
|
8 |
+
from fastapi import APIRouter
|
9 |
+
|
10 |
+
from api.schema import SuccessDetail
|
11 |
+
|
12 |
+
|
13 |
+
@asynccontextmanager
|
14 |
+
async def lifespan(app: APIRouter):
|
15 |
+
logger = logging.getLogger("uvicorn")
|
16 |
+
logger.info("Starting requirements router...")
|
17 |
+
yield
|
18 |
+
logger.info("Shutting down requirements router...")
|
19 |
+
|
20 |
+
|
21 |
+
router = APIRouter(
|
22 |
+
lifespan=lifespan,
|
23 |
+
)
|
24 |
+
|
25 |
+
|
26 |
+
@router.get(
|
27 |
+
"/",
|
28 |
+
status_code=200,
|
29 |
+
response_model=SuccessDetail,
|
30 |
+
)
|
31 |
+
async def home():
|
32 |
+
"""
|
33 |
+
Submodule home page.
|
34 |
+
"""
|
35 |
+
return {"success": "Welcome to the requirements submodule!"}
|
api/requirements/schema.py
ADDED
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
from pydantic import BaseModel
|
2 |
+
|
3 |
+
|
4 |
+
class RequirementsRequest(BaseModel):
|
5 |
+
|
6 |
+
model_name: str
|
api/schema.py
ADDED
@@ -0,0 +1,33 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
"""
|
2 |
+
Global API Schema
|
3 |
+
"""
|
4 |
+
|
5 |
+
from pydantic import BaseModel
|
6 |
+
|
7 |
+
|
8 |
+
class ErrorDetail(BaseModel):
|
9 |
+
error: str
|
10 |
+
|
11 |
+
model_config = {
|
12 |
+
"json_schema_extra": {
|
13 |
+
"examples": [
|
14 |
+
{
|
15 |
+
"error": "description of the error",
|
16 |
+
}
|
17 |
+
],
|
18 |
+
}
|
19 |
+
}
|
20 |
+
|
21 |
+
|
22 |
+
class SuccessDetail(BaseModel):
|
23 |
+
success: str
|
24 |
+
|
25 |
+
model_config = {
|
26 |
+
"json_schema_extra": {
|
27 |
+
"examples": [
|
28 |
+
{
|
29 |
+
"success": "description of the success",
|
30 |
+
}
|
31 |
+
],
|
32 |
+
}
|
33 |
+
}
|
entry.sh
ADDED
@@ -0,0 +1,4 @@
|
|
|
|
|
|
|
|
|
|
|
1 |
+
# Entrypoint
|
2 |
+
|
3 |
+
echo "Starting the application..."
|
4 |
+
uv run uvicorn api.main:app --host 0.0.0.0 --port 8000
|
pyproject.toml
ADDED
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
[project]
|
2 |
+
name = "fhe"
|
3 |
+
version = "0.0.0-dev"
|
4 |
+
description = "Add your description here"
|
5 |
+
readme = "README.md"
|
6 |
+
requires-python = ">=3.9"
|
7 |
+
dependencies = [
|
8 |
+
"fastapi>=0.103.2",
|
9 |
+
"pydantic>=1.10.18",
|
10 |
+
"uvicorn[standard]>=0.30.6",
|
11 |
+
]
|
uv.lock
ADDED
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|
|