document_redaction / tools /helper_functions.py
seanpedrickcase's picture
Removed default custom header values so as not to cause errors
7f5a542
import os
import re
import gradio as gr
import pandas as pd
import unicodedata
from gradio_image_annotation import image_annotator
def reset_state_vars():
return [], [], pd.DataFrame(), pd.DataFrame(), 0, "", image_annotator(
label="Modify redaction boxes",
label_list=["Redaction"],
label_colors=[(0, 0, 0)],
show_label=False,
sources=None,#["upload"],
show_clear_button=False,
show_share_button=False,
show_remove_button=False,
interactive=False
)
def get_or_create_env_var(var_name, default_value):
# Get the environment variable if it exists
value = os.environ.get(var_name)
# If it doesn't exist, set it to the default value
if value is None:
os.environ[var_name] = default_value
value = default_value
return value
# Names for options labels
text_ocr_option = "Simple text analysis - docs with selectable text"
tesseract_ocr_option = "OCR analysis for documents without selectable text - best for typed text"
textract_option = "Complex image analysis - docs with handwriting/signatures (AWS Textract)"
local_pii_detector = "Local"
aws_pii_detector = "AWS Comprehend"
# Retrieving or setting output folder
env_var_name = 'GRADIO_OUTPUT_FOLDER'
default_value = 'output/'
output_folder = get_or_create_env_var(env_var_name, default_value)
print(f'The value of {env_var_name} is {output_folder}')
def load_in_default_allow_list(allow_list_file_path):
if isinstance(allow_list_file_path, str):
allow_list_file_path = [allow_list_file_path]
return allow_list_file_path
def get_file_path_end(file_path):
# First, get the basename of the file (e.g., "example.txt" from "/path/to/example.txt")
basename = os.path.basename(file_path)
# Then, split the basename and its extension and return only the basename without the extension
filename_without_extension, _ = os.path.splitext(basename)
#print(filename_without_extension)
return filename_without_extension
def detect_file_type(filename):
"""Detect the file type based on its extension."""
if (filename.endswith('.csv')) | (filename.endswith('.csv.gz')) | (filename.endswith('.zip')):
return 'csv'
elif filename.endswith('.xlsx'):
return 'xlsx'
elif filename.endswith('.parquet'):
return 'parquet'
elif filename.endswith('.pdf'):
return 'pdf'
elif filename.endswith('.jpg'):
return 'jpg'
elif filename.endswith('.jpeg'):
return 'jpeg'
elif filename.endswith('.png'):
return 'png'
else:
raise ValueError("Unsupported file type.")
def read_file(filename):
"""Read the file based on its detected type."""
file_type = detect_file_type(filename)
if file_type == 'csv':
return pd.read_csv(filename, low_memory=False)
elif file_type == 'xlsx':
return pd.read_excel(filename)
elif file_type == 'parquet':
return pd.read_parquet(filename)
def ensure_output_folder_exists():
"""Checks if the 'output/' folder exists, creates it if not."""
folder_name = "output/"
if not os.path.exists(folder_name):
# Create the folder if it doesn't exist
os.makedirs(folder_name)
print(f"Created the 'output/' folder.")
else:
print(f"The 'output/' folder already exists.")
def custom_regex_load(in_file):
'''
When file is loaded, update the column dropdown choices and write to relevant data states.
'''
custom_regex = pd.DataFrame()
if in_file:
file_list = [string.name for string in in_file]
regex_file_names = [string for string in file_list if "csv" in string.lower()]
if regex_file_names:
regex_file_name = regex_file_names[0]
custom_regex = pd.read_csv(regex_file_name, low_memory=False, header=None)
#regex_file_name_no_ext = get_file_path_end(regex_file_name)
output_text = "Allow list file loaded."
print(output_text)
else:
error = "No allow list file provided."
print(error)
output_text = error
return error, custom_regex
return output_text, custom_regex
def put_columns_in_df(in_file):
new_choices = []
concat_choices = []
all_sheet_names = []
number_of_excel_files = 0
for file in in_file:
file_name = file.name
file_type = detect_file_type(file_name)
print("File type is:", file_type)
if file_type == 'xlsx':
number_of_excel_files += 1
new_choices = []
print("Running through all xlsx sheets")
anon_xlsx = pd.ExcelFile(file_name)
new_sheet_names = anon_xlsx.sheet_names
# Iterate through the sheet names
for sheet_name in new_sheet_names:
# Read each sheet into a DataFrame
df = pd.read_excel(file_name, sheet_name=sheet_name)
# Process the DataFrame (e.g., print its contents)
print(f"Sheet Name: {sheet_name}")
print(df.head()) # Print the first few rows
new_choices.extend(list(df.columns))
all_sheet_names.extend(new_sheet_names)
else:
df = read_file(file_name)
new_choices = list(df.columns)
concat_choices.extend(new_choices)
# Drop duplicate columns
concat_choices = list(set(concat_choices))
if number_of_excel_files > 0:
return gr.Dropdown(choices=concat_choices, value=concat_choices), gr.Dropdown(choices=all_sheet_names, value=all_sheet_names, visible=True)
else:
return gr.Dropdown(choices=concat_choices, value=concat_choices), gr.Dropdown(visible=False)
# Following function is only relevant for locally-created executable files based on this app (when using pyinstaller it creates a _internal folder that contains tesseract and poppler. These need to be added to the system path to enable the app to run)
def add_folder_to_path(folder_path: str):
'''
Check if a folder exists on your system. If so, get the absolute path and then add it to the system Path variable if it doesn't already exist.
'''
if os.path.exists(folder_path) and os.path.isdir(folder_path):
print(folder_path, "folder exists.")
# Resolve relative path to absolute path
absolute_path = os.path.abspath(folder_path)
current_path = os.environ['PATH']
if absolute_path not in current_path.split(os.pathsep):
full_path_extension = absolute_path + os.pathsep + current_path
os.environ['PATH'] = full_path_extension
#print(f"Updated PATH with: ", full_path_extension)
else:
print(f"Directory {folder_path} already exists in PATH.")
else:
print(f"Folder not found at {folder_path} - not added to PATH")
# Upon running a process, the feedback buttons are revealed
def reveal_feedback_buttons():
return gr.Radio(visible=True, label="Please give some feedback about the results of the redaction. A reminder that the app is only expected to identify about 60% of personally identifiable information in a given (typed) document."), gr.Textbox(visible=True), gr.Button(visible=True), gr.Markdown(visible=True)
def wipe_logs(feedback_logs_loc, usage_logs_loc):
try:
os.remove(feedback_logs_loc)
except Exception as e:
print("Could not remove feedback logs file", e)
try:
os.remove(usage_logs_loc)
except Exception as e:
print("Could not remove usage logs file", e)
# Retrieving or setting CUSTOM_HEADER
CUSTOM_HEADER = get_or_create_env_var('CUSTOM_HEADER', '')
print(f'CUSTOM_HEADER found')
# Retrieving or setting CUSTOM_HEADER_VALUE
CUSTOM_HEADER_VALUE = get_or_create_env_var('CUSTOM_HEADER_VALUE', '')
print(f'CUSTOM_HEADER_VALUE found')
async def get_connection_params(request: gr.Request):
base_folder = ""
#print("request user:", request.username)
#request_data = await request.json() # Parse JSON body
#print("All request data:", request_data)
#context_value = request_data.get('context')
#if 'context' in request_data:
# print("Request context dictionary:", request_data['context'])
print("Request headers dictionary:", request.headers)
print("All host elements", request.client)
print("IP address:", request.client.host)
print("Query parameters:", dict(request.query_params))
# To get the underlying FastAPI items you would need to use await and some fancy @ stuff for a live query: https://fastapi.tiangolo.com/vi/reference/request/
#print("Request dictionary to object:", request.request.body())
print("Session hash:", request.session_hash)
if CUSTOM_HEADER and CUSTOM_HEADER_VALUE:
if CUSTOM_HEADER in request.headers:
supplied_custom_header_value = request.headers[CUSTOM_HEADER]
if supplied_custom_header_value == CUSTOM_HEADER_VALUE:
print("Custom header supplied and matches CUSTOM_HEADER_VALUE")
else:
print("Custom header value does not match expected value.")
raise ValueError("Custom header value does not match expected value.")
else:
print("Custom header value not found.")
raise ValueError("Custom header value not found.")
# Get output save folder from 1 - username passed in from direct Cognito login, 2 - Cognito ID header passed through a Lambda authenticator, 3 - the session hash.
if request.username:
out_session_hash = request.username
base_folder = "user-files/"
print("Request username found:", out_session_hash)
elif 'x-cognito-id' in request.headers:
out_session_hash = request.headers['x-cognito-id']
base_folder = "user-files/"
print("Cognito ID found:", out_session_hash)
else:
out_session_hash = request.session_hash
base_folder = "temp-files/"
# print("Cognito ID not found. Using session hash as save folder:", out_session_hash)
output_folder = base_folder + out_session_hash + "/"
#if bucket_name:
# print("S3 output folder is: " + "s3://" + bucket_name + "/" + output_folder)
return out_session_hash, output_folder, out_session_hash
def clean_unicode_text(text):
# Step 1: Normalize unicode characters to decompose any special forms
normalized_text = unicodedata.normalize('NFKC', text)
# Step 2: Replace smart quotes and special punctuation with standard ASCII equivalents
replacements = {
'β€˜': "'", '’': "'", 'β€œ': '"', '”': '"',
'–': '-', 'β€”': '-', '…': '...', 'β€’': '*',
}
# Perform replacements
for old_char, new_char in replacements.items():
normalized_text = normalized_text.replace(old_char, new_char)
# Step 3: Optionally remove non-ASCII characters if needed
# This regex removes any remaining non-ASCII characters, if desired.
# Comment this line if you want to keep all Unicode characters.
cleaned_text = re.sub(r'[^\x00-\x7F]+', '', normalized_text)
return cleaned_text